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WormBase Tree Display for Gene: WBGene00094693

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Name Class

WBGene00094693SMapS_parentSequencePPA_ChrV
IdentityVersion1
NameCGC_namePpa-xrn-2From_analysisInferred_from_orthology
Sequence_namePPA05139
Molecular_namePPA05139
PPA05139.1
PP64798
Other_nameGENEPREDICTION_SNAP300000061600
UMM-S2868-6.29Person_evidenceWBPerson606
Public_namePpa-xrn-2
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxrn
RNASeq_FPKMWBls:00000325.17349From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.35372From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
4.88766From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00175496
00175497
00175498
00175499
00175500
Ortholog (35)
ParalogWBGene00110599Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273808Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273812Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273814Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable 5'-3' RNA exonuclease activity and nucleic acid binding activity. Predicted to be involved in nucleobase-containing compound metabolic process. Predicted to be located in nucleus. Is an ortholog of C. elegans xrn-2. In C. elegans, xrn-2 is involved in several processes, including miRNA catabolic process; negative regulation of miRNA-mediated gene silencing; and regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA05139
Corresponding_transcriptPPA05139.1
Other_sequence (33)
Experimental_infoMicroarray_resultsGPL14372_Probes_57686
GPL14372_Probes_57687
GPL14372_Probes_57688
GPL14372_Probes_57689
Expression_clusterWBPaper00041207:PP_dauer_up
WBPaper00041466:PP_germline-ablation_regulated
MethodGene