WormBase Tree Display for Gene: WBGene00094269
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| WBGene00094269 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-cog-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA04715 | ||||||||
| Molecular_name | PPA04715 | ||||||||
| PPA04715.1 | |||||||||
| PP67520 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000061133 | ||||||||
| GENEPREDICTION_SNAP300000061134 | |||||||||
| GENEPREDICTION_SNAP300000061135 | |||||||||
| UMM-S273-1.18 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-cog-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-cog-1 | ||||
| 3 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00094270 | ||||
| 4 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00094271 | ||||
| 5 | 08 Feb 2019 15:42:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-cog-1 | ||||
| 7 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-cog-1 | ||||
| Acquires_merge | WBGene00094270 | ||||||||
| WBGene00094271 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cog | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.43998 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.47999 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00175342 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00092233 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00100166 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00109181 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00202633 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00277827 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00305060 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity. Is an ortholog of C. elegans cog-1. In C. elegans, cog-1 is involved in several processes, including determination of left/right symmetry; neuron development involved in amphid sensory organ development; and regulation of gene expression. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA04715 | |||||||
| Corresponding_transcript | PPA04715.1 | ||||||||
| Other_sequence | FG586235.1 | ||||||||
| Acan_isotig13639 | |||||||||
| JI182128.1 | |||||||||
| TSC09280_1 | |||||||||
| Tcol_isotig02673 | |||||||||
| JI470465.1 | |||||||||
| ES561757.1 | |||||||||
| Oden_isotig19661 | |||||||||
| SC00851 | |||||||||
| GR978654.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_79207 | |||||||
| GPL14372_Probes_79208 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-cog-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-cog-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
