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WormBase Tree Display for Gene: WBGene00086974

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Name Class

WBGene00086974SMapS_parentSequencecb25.fpc0058
IdentityVersion1
NameSequence_nameCBG25560
Molecular_nameCBG25560
CBG25560.1
CBP48667
Other_nameCBG_25560Accession_evidenceNDBHE601438
Public_nameCBG25560
DB_infoDatabaseNDBlocus_tagCBG_25560
SpeciesCaenorhabditis briggsae
HistoryVersion_change123 Jul 2008 11:20:50WBPerson1847EventImportednGASP new gene
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00141971
WBVar00141972
WBVar00141973
RNASeq_FPKMWBls:000000212.1049From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.9336From_analysisRNASeq.briggsae.WBls:0000002.control_mean
21.4502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
8.24567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
10.1753From_analysisRNASeq.briggsae.WBls:0000002.control_median
11.4695From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.07722From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000031.33409From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
2.67621From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.01833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.17799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
2.1768From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000046.08849From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
6.30084From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
6.51318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.39678From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.18657From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.34378From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
6.59062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.1376From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.21412From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.43814From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.59662From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.6055From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.28787From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003515.6356From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.6177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
16.8619From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.0514From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.95723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
23.4851From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
31.3876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004111.5286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.80187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.65195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.96052From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.26909From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.56288From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.6779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
18.3767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
7.89885From_analysisRNASeq.briggsae.WBls:0000041.control_median
8.71768From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000631.65825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.9813From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.05971From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.16987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.7709From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.98536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.11479From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.21942From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.46202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001016.08849From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.92889From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.21614From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.80718From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00009660Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00053355Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00148652Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00193033Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00100205Pristionchus pacificusFrom_analysisInparanoid_8
CSP26.g15165Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP40.g16057Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_II.g5630Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00086.g3825Caenorhabditis sinicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: RING-type zinc-finger; RING-type zinc-finger, LisH dimerisation motif; Zinc finger, RING/FYVE/PHD-type; and Zinc finger, RING-type. Is an ortholog of C. elegans F43G6.8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG25560
Corresponding_CDS_historyCBG25560:bp263
Corresponding_transcriptCBG25560.1
Experimental_infoExpr_patternExpr1050891
Microarray_resultsGPL14143_CBG25560_671-730_0.323_204_A
MethodGene