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WormBase Tree Display for Gene: WBGene00083079

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Name Class

WBGene00083079SMapS_parentSequenceCrem_Contig36
IdentityVersion2
NameCGC_nameCre-unc-89From_analysisInferred_from_orthology
Sequence_nameCRE24007
Molecular_nameCRE24007
CRE24007.1
RP45264
Public_nameCre-unc-89
SpeciesCaenorhabditis remanei
HistoryVersion_change103 Jul 2008 11:46:54WBPerson4055EventCreated
204 Jul 2008 11:06:47WBPerson4055Name_changeCGC_nameCre-unc-89
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000040.798338From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
0.811378From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
0.824418From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (53)
WBls:000002724.2214From_analysisRNASeq.remanei.WBls:0000027.control_mean
28.8537From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
29.8879From_analysisRNASeq.remanei.WBls:0000027.control_median
30.9221From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
33.4748From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
3.63484From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003810.5438From_analysisRNASeq.remanei.WBls:0000038.control_mean
10.9951From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
11.2557From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
9.38054From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:00000412.2586From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
2.63723From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
4.27055From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
4.38685From_analysisRNASeq.remanei.WBls:0000041.control_mean
4.6311From_analysisRNASeq.remanei.WBls:0000041.control_median
4.99166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
5.72527From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
6.4378From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:0000063 (12)
WBls:000010110.8731From_analysisRNASeq.remanei.total_over_all_stages.control_median
11.3325From_analysisRNASeq.remanei.total_over_all_stages.control_mean
OrthologWBGene00001863Caenorhabditis elegansFrom_analysisOMA
WBGene00006820Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00033078Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00091221Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00126725Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00142285Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190119Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145591Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00134208Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00134783Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214107Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g9266Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2659Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g17859Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7002Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1940Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g8418Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17818Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g17819Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14098Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5652Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16404Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00013.g935Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00013.g937Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03716.g18317Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08662.g21638Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_25566.g27313Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_28442.g27649Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g1947Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g1949Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g1950Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6683Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold627.g6684Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00316.g9276Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00316.g9278Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00316.g9280Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08243Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_08246Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_08247Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_002245Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_002246Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09828Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09830Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12201Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10153710Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g629Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00293109Trichuris murisFrom_analysisWormBase-Compara
Paralog (19)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin I-set domain; RCSD; Immunoglobulin I-set; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; Immunoglobulin V-set domain; Immunoglobulin subtype; and RCSD region. Is an ortholog of C. elegans unc-89. In C. elegans, unc-89 is involved in several processes, including myofibril assembly; pharyngeal gland morphogenesis; and regulation of striated muscle contraction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE24007
Corresponding_transcriptCRE24007.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1100821
Microarray_resultsGPL14146_CRE24007_13437-13496_0.870_40_A
GPL14146_CRE24007_13946-14005_0.958_1_B
GPL14146_CRE24007_4798-4857_0.748_759_C
MethodGene