WormBase Tree Display for Gene: WBGene00071921

WBGene00071921 SMap: S_parent: Sequence: Crem_Contig67
  Identity: Version: 3
    Name: CGC_name: Cre-ccr-4 From_analysis: Inferred_from_orthology
      Sequence_name: CRE15514
      Molecular_name: CRE15514
        CRE15514.1
        RP32688
      Other_name: cr01.sctg290.wum.13
      Public_name: Cre-ccr-4
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:29 WBPerson1847 Event: Created
        2 03 Jul 2008 11:46:34 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE15514
                Other_name: cr01.sctg290.wum.13
        3 04 Jul 2008 11:06:46 WBPerson4055 Name_change: CGC_name: Cre-ccr-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ccr
    RNASeq_FPKM: WBls:0000004 184.415 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        190.602 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        196.788 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 11.7653 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        38.8037 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        38.8465 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        44.1312 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        49.4587 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        55.3584 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
      WBls:0000038 15.5223 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        20.6354 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        21.952 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        24.4318 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 19.7577 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        25.1283 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        26.4709 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        52.0436 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        55.028 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        77.6163 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        89.7183 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        91.4765 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 27.0546 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        46.3754 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00165800
    Ortholog (29)
    Paralog: WBGene00055830 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00062088 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00066260 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00071922 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00086358 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Is an ortholog of C. elegans ccr-4. In C. elegans, ccr-4 is involved in nuclear-transcribed mRNA poly(A) tail shortening. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE15514
    Corresponding_transcript: CRE15514.1
    Other_sequence (23)
  Experimental_info: Expr_pattern: Expr1100652
    Microarray_results: GPL14146_CRE15514_1228-1287_0.808_128_C
      GPL14146_CRE15514_1538-1597_0.896_35_B
      GPL14146_CRE15514_1742-1801_0.942_5_A
  Method: Gene