WormBase Tree Display for Gene: WBGene00071518

expand all nodes | collapse all nodes | view schema

WBGene00071518	SMap	S_parent	Sequence	Crem_Contig8
	Identity	Version	3
		Name	CGC_name	Cre-unc-39	From_analysis	Inferred_from_orthology
			Sequence_name	CRE30923
			Molecular_name	CRE30923
				CRE30923.1
				RP45893
			Other_name	cr01.sctg258.wum.2
			Public_name	Cre-unc-39
		Species	Caenorhabditis remanei
		History	Version_change	1	09 Nov 2007 10:19:28	WBPerson1847	Event	Created
				2	29 Nov 2007 17:00:48	WBPerson2970	Name_change	CGC_name	Cre-unc-39
				3	03 Jul 2008 11:46:32	WBPerson4055	Event	Imported	from NGASP
							Name_change	Sequence_name	CRE30923
								Other_name	cr01.sctg258.wum.2
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	unc
		RNASeq_FPKM	WBls:0000004	4.72385	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
				6.74867	From_analysis	RNASeq.remanei.WBls:0000004.control_mean
						RNASeq.remanei.WBls:0000004.control_median
				8.77349	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
			WBls:0000024 (49)
			WBls:0000027	0.325356	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
				0.616488	From_analysis	RNASeq.remanei.WBls:0000027.control_median
				0.907619	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
				0.974436	From_analysis	RNASeq.remanei.WBls:0000027.control_mean
				0	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
				2.66477	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
			WBls:0000038	0.309174	From_analysis	RNASeq.remanei.WBls:0000038.control_mean
				0.360901	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
						RNASeq.remanei.WBls:0000038.control_median
				0.56662	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
				0	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
			WBls:0000041	0.285021	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
				0.391969	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
				0.499371	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
				0.502217	From_analysis	RNASeq.remanei.WBls:0000041.control_median
				0.502819	From_analysis	RNASeq.remanei.WBls:0000041.control_mean
				0.505064	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
				0.558101	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
				0.777388	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
			WBls:0000063	0.148881	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
				0.172657	From_analysis	RNASeq.remanei.WBls:0000063.control_mean
				0.472698	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
				0.537968	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
				0.567024	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
				0	From_analysis	RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
						RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
						RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
						RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
						RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
						RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
						RNASeq.remanei.WBls:0000063.control_median
			WBls:0000101	0.376435	From_analysis	RNASeq.remanei.total_over_all_stages.control_median
				0.887157	From_analysis	RNASeq.remanei.total_over_all_stages.control_mean
		GO_annotation	00165481
			00165482
		Ortholog	WBGene00006775	Caenorhabditis elegans	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00027265	Caenorhabditis briggsae	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00162675	Caenorhabditis brenneri	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00119474	Caenorhabditis japonica	From_analysis	Inparanoid_8
						WormBase-Compara
			WBGene00220783	Brugia malayi	From_analysis	WormBase-Compara
			WBGene00242653	Onchocerca volvulus	From_analysis	WormBase-Compara
			CBOVI.g714	Caenorhabditis bovis	From_analysis	WormBase-Compara
			CSP21.g6220	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP26.g12807	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP28.g2682	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g11984	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g25814	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g14043	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g14946	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g8396	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP40.g4601	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00188.g6582	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cni-unc-39	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold630.g19894	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_00004.g250	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_22366	Caenorhabditis latens	From_analysis	WormBase-Compara
			FL83_23481	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_017520	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g00345	Oscheius tipulae	From_analysis	WormBase-Compara
			Pan_g5854	Panagrellus redivivus	From_analysis	WormBase-Compara
			Sp34_50361400	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			chrV_pilon.g16510	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00258871	Strongyloides ratti	From_analysis	WormBase-Compara
			WBGene00285982	Trichuris muris	From_analysis	WormBase-Compara
			WBGene00296736	Trichuris muris	From_analysis	WormBase-Compara
		Paralog	WBGene00071517	Caenorhabditis remanei	From_analysis	Inparanoid_8
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00052337	Caenorhabditis remanei	From_analysis	WormBase-Compara
						GeneACeDB-Compara
			WBGene00052748	Caenorhabditis remanei	From_analysis	WormBase-Compara
						GeneACeDB-Compara
		Structured_description	Automated_description	Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans unc-39. In C. elegans, unc-39 is involved in several processes, including egg-laying behavior; generation of neurons; and regulation of locomotion.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info (3)
	Experimental_info	Expr_pattern	Expr1113198
		Microarray_results	GPL14146_CRE30923_603-662_0.909_20_C
			GPL14146_CRE30923_830-889_0.655_159_B
			GPL14146_CRE30923_956-1015_0.949_4_A
	Method	Gene