WormBase Tree Display for Gene: WBGene00070440

WBGene00070440 SMap: S_parent: Sequence: Crem_Contig192
  Identity: Version: 3
    Name: CGC_name: Cre-unc-55 From_analysis: Inferred_from_orthology
      Sequence_name: CRE22101
      Molecular_name: CRE22101
        CRE22101.1
        RP45694
      Other_name: cr01.sctg187.wum.12
      Public_name: Cre-unc-55
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:28 WBPerson1847 Event: Created
        2 03 Jul 2008 11:46:29 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE22101
                Other_name: cr01.sctg187.wum.12
        3 04 Jul 2008 11:06:46 WBPerson4055 Name_change: CGC_name: Cre-unc-55
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000004 0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
            RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
            RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
      WBls:0000024 (31)
      WBls:0000027 0.454675 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        1.68838 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        1.98368 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        2.27898 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        2.97173 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        7.4649 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 1.61968 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        2.08228 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        2.77676 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 0.288112 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.303651 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.397906 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        1.98744 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        2.16126 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        3.57697 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        3.79388 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        4.60705 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 0.484976 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        0.740802 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        1.02129 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        1.30178 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        2.41084 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        3.9334 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        5.2687 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        5.60928 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        6.76941 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
      WBls:0000101 1.02129 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        2.07007 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog: WBGene00006790 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00030075 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00184992 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00137481 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00217407 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00140269 Caenorhabditis brenneri From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      CSP26.g6048 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2915 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1717 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP32.g11899 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g9324 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14209 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00015.g1007 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_I.g1550 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold498.g2228 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00462.g11688 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_13170 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000420 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g13622 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g19416 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10073100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1475 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (250)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Nuclear hormone receptor-like domain superfamily; Ligand-binding domain of nuclear hormone receptor; and Nuclear hormone receptor, ligand-binding domain. Is an ortholog of C. elegans unc-55. In C. elegans, unc-55 is involved in cell fate specification and negative regulation of transcription by RNA polymerase II. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE22101
    Corresponding_transcript: CRE22101.1
    Other_sequence: Tcol_isotig21516
      CJC05575_1
  Experimental_info: Expr_pattern: Expr1097409
    Microarray_results: GPL14146_CRE22101_222-281_0.853_14_C
      GPL14146_CRE22101_338-397_0.800_24_A
      GPL14146_CRE22101_686-745_0.631_77_B
  Reference: WBPaper00050135
  Method: Gene