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WormBase Tree Display for Gene: WBGene00062560

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Name Class

WBGene00062560SMapS_parentSequenceCrem_Contig20
IdentityVersion3
NameCGC_nameCre-gtl-2From_analysisInferred_from_orthology
Sequence_nameCRE12587
Molecular_nameCRE12587
CRE12587.1
RP41361
Other_namecr01.sctg32.wum.110
Public_nameCre-gtl-2
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
229 Nov 2007 17:00:47WBPerson2970Name_changeCGC_nameCre-gtl-2
303 Jul 2008 11:45:46WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE12587
Other_namecr01.sctg32.wum.110
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgtl
RNASeq_FPKMWBls:00000040.059349From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
0.118697From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.108578From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
0.875414From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
1.09997From_analysisRNASeq.remanei.WBls:0000027.control_mean
1.26031From_analysisRNASeq.remanei.WBls:0000027.control_median
1.64521From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
1.77068From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:00000380.109944From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
1.40771From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
1.4792From_analysisRNASeq.remanei.WBls:0000038.control_mean
2.91995From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:00000410.486154From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
0.489864From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
0.515744From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
1.23541From_analysisRNASeq.remanei.WBls:0000041.control_median
1.31514From_analysisRNASeq.remanei.WBls:0000041.control_mean
1.95508From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
1.98121From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
2.4628From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:00000630.161336From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
0.649928From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
0.71115From_analysisRNASeq.remanei.WBls:0000063.control_median
0.772372From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
0.801221From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
0.805219From_analysisRNASeq.remanei.WBls:0000063.control_mean
1.10094From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
1.21573From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
0From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
3.35066From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
WBls:00001010.71115From_analysisRNASeq.remanei.total_over_all_stages.control_median
0.957662From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00158028
00158029
00158030
00158031
Ortholog (35)
ParalogWBGene00062550Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00064240Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00055164Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059204Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00059502Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00070758Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00072114Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00074899Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00076273Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00077032Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable monoatomic ion channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans gtl-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE12587
Corresponding_transcriptCRE12587.1
Other_sequence (13)
Experimental_infoExpr_patternExpr1104327
Expr1106008
Microarray_resultsGPL14146_CRE12587_3093-3152_0.822_52_C
GPL14146_CRE12587_3209-3268_0.873_14_B
GPL14146_CRE12587_3384-3443_0.889_12_A
GPL14146_CRE29387_1155-1214_0.900_13_C
GPL14146_CRE29387_872-931_0.918_7_A
GPL14146_CRE29387_916-975_0.909_10_B
MethodGene