WormBase Tree Display for Gene: WBGene00059849

WBGene00059849 SMap: S_parent: Sequence: Crem_Contig9
  Identity: Version: 3
    Name: CGC_name: Cre-ned-8 From_analysis: Inferred_from_orthology
      Sequence_name: CRE29627
      Molecular_name: CRE29627
        CRE29627.1
        RP11418
      Other_name: cr01.sctg16.wum.23
      Public_name: Cre-ned-8
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:26 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE29627
                Other_name: cr01.sctg16.wum.23
        3 04 Jul 2008 11:06:40 WBPerson4055 Name_change: CGC_name: Cre-ned-8
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ned
    RNASeq_FPKM: WBls:0000004 1021.4 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        874.828 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        948.114 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
      WBls:0000024 (53)
      WBls:0000027 157.324 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        158.906 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        174.273 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        191.221 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        256.319 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        30.7615 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 204.956 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        25.3534 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        276.78 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        312.734 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 254.636 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        282.264 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        291.228 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        374.885 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        375.181 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        459.134 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        467.499 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        494.548 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 169.672 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        251.193 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (14)
    Paralog: WBGene00063598 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00055538 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00063432 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00064426 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00064427 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00066401 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00082851 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Ubiquitin family; Ubiquitin-like domain superfamily; Ubiquitin domain; and Ubiquitin-like domain. Is an ortholog of C. elegans ned-8. In C. elegans, ned-8 is involved in negative regulation of DNA damage response, signal transduction by p53 class mediator; negative regulation of gene expression; and regulation of apoptotic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE29627
    Corresponding_transcript: CRE29627.1
    Other_sequence (87)
  Experimental_info: Expr_pattern: Expr1097831
    Microarray_results: GPL14146_CRE29627_127-186_0.957_2_C
      GPL14146_CRE29627_130-189_0.964_1_A
      GPL14146_CRE29627_23-82_0.944_6_B
  Method: Gene