WormBase Tree Display for Gene: WBGene00058555

WBGene00058555 SMap: S_parent: Sequence: Crem_Contig27
  Identity: Version: 4
    Name: CGC_name: Cre-unc-3 From_analysis: Inferred_from_orthology
      Sequence_name: CRE15310
      Molecular_name: CRE15310
        CRE15310.1
        RP27403
      Other_name: cr01.sctg12.wum.61
        cr01.sctg12.wum.61.2
      Public_name: Cre-unc-3
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:49 WBPerson2970 Name_change: CGC_name: Cre-unc-3
        3 03 Jul 2008 11:45:19 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE15310
                Other_name: cr01.sctg12.wum.61
        4 03 Jul 2008 11:48:41 WBPerson4055 Event: Acquires_merge: WBGene00058556
              Name_change: Other_name: cr01.sctg12.wum.61.2
      Acquires_merge: WBGene00058556
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000004 0.790948 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        1.10854 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        1.42613 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.11965 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        0.852741 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        1.28762 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        1.65221 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        1.72249 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        3.91396 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 0.605777 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        0.624327 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
            RNASeq.remanei.WBls:0000038.control_median
        0.708483 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        0.895345 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 0.183912 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        0.236738 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        0.256635 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        0.593557 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        0.600199 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        0.93048 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        0.96572 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        1.02771 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 0.157682 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        0.33004 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        0.399623 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        0.847161 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
            RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
            RNASeq.remanei.WBls:0000063.control_median
      WBls:0000101 0.364832 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        0.620361 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00153965
      00153966
      00153967
    Ortholog: WBGene00006743 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00029583 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00110071 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00151995 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119650 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226557 Brugia malayi From_analysis: WormBase-Compara
      WBGene00240610 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g2839 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15800 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16856 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g23179 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25081 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9744 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18768 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g16929 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8761 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00272.g8258 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10038 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00144.g5548 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01698 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_025639 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07560 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g2071 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0141800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20643 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00265590 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00291761 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity and protein dimerization activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans unc-3. In C. elegans, unc-3 is involved in several processes, including dauer larval development; neuron differentiation; and positive regulation of transcription by RNA polymerase II. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE15310
    Corresponding_transcript: CRE15310.1
    Other_sequence (15)
  Experimental_info: Expr_pattern: Expr1094931
    Microarray_results: GPL14146_CRE15310_1113-1172_0.931_4_A
      GPL14146_CRE15310_660-719_0.855_34_C
      GPL14146_CRE15310_967-1026_0.894_14_B
  Method: Gene