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WormBase Tree Display for Gene: WBGene00054314

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Name Class

WBGene00054314SMapS_parentSequenceCrem_Contig6
IdentityVersion3
NameCGC_nameCre-brf-1From_analysisInferred_from_orthology
Sequence_nameCRE26428
Molecular_nameCRE26428
CRE26428.1
RP40397
Other_namecr01.sctg3.wum.321
Public_nameCre-brf-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:44WBPerson2970Name_changeCGC_nameCre-brf-1
303 Jul 2008 11:44:49WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE26428
Other_namecr01.sctg3.wum.321
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classbrf
RNASeq_FPKMWBls:000000449.8633From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
51.7248From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
53.5863From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:0000024 (53)
WBls:00000270.835279From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
10.1458From_analysisRNASeq.remanei.WBls:0000027.control_median
11.1998From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
11.2765From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
8.10084From_analysisRNASeq.remanei.WBls:0000027.control_mean
9.09178From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
WBls:00000382.39639From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
6.13384From_analysisRNASeq.remanei.WBls:0000038.control_mean
7.42209From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
8.58304From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:000004125.5026From_analysisRNASeq.remanei.WBls:0000041.control_mean
25.5555From_analysisRNASeq.remanei.WBls:0000041.control_median
41.8583From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
42.1545From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
43.4954From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
7.12013From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
9.13439From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
9.25271From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
WBls:0000063 (12)
WBls:000010114.4002From_analysisRNASeq.remanei.total_over_all_stages.control_mean
8.00257From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00149641
00149642
00149643
Ortholog (28)
ParalogWBGene00062172Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00082455Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable TBP-class protein binding activity. Predicted to be involved in transcription preinitiation complex assembly. Is an ortholog of C. elegans brf-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE26428
Corresponding_transcriptCRE26428.1
Other_sequence (21)
Experimental_infoExpr_patternExpr1102424
Microarray_resultsGPL14146_CRE26428_675-734_0.826_76_C
GPL14146_CRE26428_782-841_0.763_152_A
GPL14146_CRE26428_834-893_0.841_62_B
MethodGene