WormBase Tree Display for Gene: WBGene00045058

WBGene00045058 SMap: S_parent: Sequence: Y71A12B
  Identity: Version: 2
    Name: CGC_name: gadr-5 Person_evidence: WBPerson206
      Sequence_name: Y71A12B.17
      Molecular_name: Y71A12B.17a
        Y71A12B.17a.1
        CE47935
        Y71A12B.17b
        CE48003
        Y71A12B.17b.1
      Other_name: CELE_Y71A12B.17 Accession_evidence: NDB BX284601
      Public_name: gadr-5
    DB_info: Database: AceView gene Y71A12B.17
        WormFlux gene WBGene00045058
        NDB locus_tag CELE_Y71A12B.17
        Panther gene CAEEL|WormBase=WBGene00045058|UniProtKB=G3DRG2
          family PTHR12904
        NCBI gene 4927064
        RefSeq protein NM_001265335.3
            NM_001265336.3
        TREEFAM TREEFAM_ID TF322626
        TrEMBL UniProtAcc H2KMM0
            G3DRG2
        UniProt_GCRP UniProtAcc H2KMM0
    Species: Caenorhabditis elegans
    History: Version_change: 1 10 Oct 2006 13:50:25 WBPerson1983 Event: Created
        2 12 Oct 2010 11:39:13 WBPerson2970 Name_change: CGC_name: gadr-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gadr
    Allele (103)
    Strain: WBStrain00033237
    RNASeq_FPKM (74)
    GO_annotation (2)
    Ortholog: WBGene00029320 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00142357 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00163592 Caenorhabditis brenneri From_analysis: Inparanoid_8
      WBGene00153630 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CSP21.g10245 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13178 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      GCK72_020159 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10089 Oscheius tipulae From_analysis: WormBase-Compara
      chrI_pilon.g2824 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00056811 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog (32)
    Structured_description: Automated_description: Predicted to be located in membrane. Predicted to be part of Cul2-RING ubiquitin ligase complex. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71A12B.17a
      Y71A12B.17b
    Corresponding_CDS_history: Y71A12B.17:wp229
    Corresponding_transcript: Y71A12B.17a.1
      Y71A12B.17b.1
    Associated_feature: WBsf643825
      WBsf657057
      WBsf985993
      WBsf985994
      WBsf985995
      WBsf1011148
      WBsf218763
  Experimental_info: RNAi_result: WBRNAi00021589 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015483
      Expr1040346
      Expr1161551
      Expr2011936
      Expr2030173
    Drives_construct: WBCnstr00023316
    Construct_product: WBCnstr00009957
      WBCnstr00023316
    Microarray_results (14)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00042561:smgl-1(RNAi)_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00049098:heat-induced_hrde-1(tm1200)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00053289:DREAM-target
      WBPaper00053810:clk-1(qm30)_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055386:eat-2(ad465)_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056167:Cry5B_upregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056550:ceh-60(ok1485)_downregulated_AdultDay1
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
      WBPaper00057162:meg-3_meg-4_upregulated_sRNA
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00061340:F_U
      WBPaper00061340:Glia
      WBPaper00061340:hyp3
      WBPaper00061340:Parents_of_U_F_B_DVA
      WBPaper00061340:Parent_of_AMsh_URB
      WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
      WBPaper00061340:Parent_of_hyp3_ILsoDx
      WBPaper00061340:PLM
      WBPaper00061340:rect_D
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_downregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:hrde-1(tm1200)_upregulated
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062146:MOG-7-degron_2h_regulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062606:rotenone_upregulated
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064494:postdauer_upregulated_WholeAnimal
      WBPaper00064532:pals-25(icb98)_downregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064999:miR-229-64-65-66_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066110:Cisplatin_downregulated_diploid
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      [cgc5767]:cluster_4
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(101_min)
      [cgc5767]:expression_class_E_pi(83_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(83_min)
    Interaction: WBInteraction000540876
      WBInteraction000540877
      WBInteraction000556336
  Map_info: Map: I Position: 22.4419 Error: 0.02212
    Positive: Positive_clone: Y71A12B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038341
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene