WormBase Tree Display for Gene: WBGene00044077
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| WBGene00044077 | Evidence | Inferred_automatically | Gene name parsed from strain object: VC748 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T18H9 | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | pacs-1 | Person_evidence | WBPerson293 | |||||
| Sequence_name | T18H9.7 | ||||||||
| Molecular_name | T18H9.7 | ||||||||
| T18H9.7.1 | |||||||||
| CE19588 | |||||||||
| Other_name | tag-232 | ||||||||
| CELE_T18H9.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | pacs-1 | ||||||||
| DB_info | Database | AceView | gene | 5J694 | |||||
| WormQTL | gene | WBGene00044077 | |||||||
| WormFlux | gene | WBGene00044077 | |||||||
| NDB | locus_tag | CELE_T18H9.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00044077|UniProtKB=Q95QA3 | |||||||
| family | PTHR13280 | ||||||||
| NCBI | gene | 179304 | |||||||
| RefSeq | protein | NM_072986.9 | |||||||
| TrEMBL | UniProtAcc | Q95QA3 | |||||||
| UniProt_GCRP | UniProtAcc | Q95QA3 | |||||||
| OMIM | gene | 607492 | |||||||
| 610423 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 23 Dec 2004 10:27:46 | WBPerson2970 | Event | Created | |||
| 2 | 05 Oct 2005 17:16:53 | WBPerson2970 | Event | Acquires_merge | WBGene00020552 | ||||
| Name_change | Sequence_name | T18H9.7 | |||||||
| 3 | 15 Jul 2019 14:29:07 | WBPerson1983 | Name_change | CGC_name | pacs-1 | ||||
| Other_name | tag-232 | ||||||||
| Acquires_merge | WBGene00020552 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pacs | ||||||||
| Allele (42) | |||||||||
| Strain | WBStrain00036035 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088266 | ||||||||
| Contained_in_operon | CEOP5220 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein localization to plasma membrane. Expressed in several structures, including excretory cell; intestine; neurons; pharynx; and vulva. Human ortholog(s) of this gene implicated in Schuurs-Hoeijmakers Syndrome and developmental and epileptic encephalopathy 66. Is an ortholog of human PACS1 (phosphofurin acidic cluster sorting protein 1) and PACS2 (phosphofurin acidic cluster sorting protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080446 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23794) | ||||
| DOID:0070047 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30032) | ||||||
| Molecular_info | Corresponding_CDS | T18H9.7 | |||||||
| Corresponding_CDS_history | T18H9.7c:wp275 | ||||||||
| Corresponding_transcript | T18H9.7.1 | ||||||||
| Other_sequence | CGC00340_1 | ||||||||
| JI163842.1 | |||||||||
| CGC00543_1 | |||||||||
| BUC01918_1 | |||||||||
| TSC03423_1 | |||||||||
| JI164658.1 | |||||||||
| FG588608.1 | |||||||||
| TS00149 | |||||||||
| Dviv_isotig23357 | |||||||||
| CBC17782_1 | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr3532 | ||||||||
| Expr3557 | |||||||||
| Expr1021666 | |||||||||
| Expr1040181 | |||||||||
| Expr1157043 | |||||||||
| Expr2014678 | |||||||||
| Expr2017243 | |||||||||
| Expr2032911 | |||||||||
| Expr2035379 | |||||||||
| Drives_construct | WBCnstr00011456 | ||||||||
| WBCnstr00023777 | |||||||||
| Construct_product | WBCnstr00011481 | ||||||||
| WBCnstr00023777 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | V | Position | 1.9517 | Error | 0.000348 | |||
| Positive | Positive_clone | T18H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5601 | |||||||
| 5651 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040135 | |||||||||
| WBPaper00045775 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063700 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Previously in the tag gene class | |||||||||
| Method | Gene |
