WormBase Tree Display for Gene: WBGene00043064

WBGene00043064 SMap: S_parent: Sequence: Y59E9AL
  Identity: Version: 2
    Name: CGC_name: nbet-1 Person_evidence: WBPerson3132
      Sequence_name: Y59E9AL.7
      Molecular_name: Y59E9AL.7
        Y59E9AL.7.1
        CE37577
      Other_name: CELE_Y59E9AL.7 Accession_evidence: NDB BX284604
      Public_name: nbet-1
    DB_info: Database: AceView gene 4F975
        WormFlux gene WBGene00043064
        NDB locus_tag CELE_Y59E9AL.7
        Panther gene CAEEL|WormBase=WBGene00043064|UniProtKB=G5EEU1
          family PTHR12791
        NCBI gene 259570
        RefSeq protein NM_001028367.6
        TREEFAM TREEFAM_ID TF323307
        TrEMBL UniProtAcc G5EEU1
        UniProt_GCRP UniProtAcc G5EEU1
    Species: Caenorhabditis elegans
    History: Version_change: 1 24 Sep 2004 09:42:57 WBPerson1867 Event: Created
        2 26 Mar 2010 11:10:21 WBPerson2970 Name_change: CGC_name: nbet-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nbet
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (35)
    Paralog: WBGene00015789 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of SNARE complex. Is an ortholog of human BET1 (Bet1 golgi vesicular membrane trafficking protein). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y59E9AL.7
    Corresponding_transcript: Y59E9AL.7.1
    Other_sequence (45)
    Associated_feature: WBsf659788
      WBsf660145
      WBsf977093
      WBsf228271
  Experimental_info: RNAi_result: WBRNAi00110505 Inferred_automatically: RNAi_primary
      WBRNAi00110499 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1023072
      Expr1040148
      Expr1161199
      Expr2013899
      Expr2032139
    Drives_construct: WBCnstr00023831
    Construct_product: WBCnstr00023831
    Microarray_results (13)
    Expression_cluster: WBPaper00042561:smgl-1(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050225:flp-6(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061651:Coelomocyte_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
      WBPaper00064005:starvation_downregulated_N2_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064130:Beta-Amyloid_upregulated_protein
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065158:AFD_depleted
      WBPaper00065258:anchor-cell_enriched
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
    Interaction: WBInteraction000035517
      WBInteraction000035518
      WBInteraction000559665
      WBInteraction000573955
      WBInteraction000574319
      WBInteraction000581303
      WBInteraction000582768
  Map_info: Map: IV Position: 1.56747 Error: 0.001063
    Positive: Positive_clone: Y59E9AL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene