WormBase Tree Display for Gene: WBGene00043062
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| WBGene00043062 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-80 | Person_evidence | WBPerson261 | |||||
| WBPerson655 | |||||||||
| Sequence_name | Y54G2A.39 | ||||||||
| Molecular_name | Y54G2A.39a | ||||||||
| Y54G2A.39a.1 | |||||||||
| CE37574 | |||||||||
| Y54G2A.39b | |||||||||
| CE27497 | |||||||||
| Y54G2A.39b.1 | |||||||||
| Y54G2A.39c | |||||||||
| Other_name | clec-81 | ||||||||
| CELE_Y54G2A.39 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | clec-80 | ||||||||
| DB_info | Database | AceView | gene | 4D591 | |||||
| WormFlux | gene | WBGene00043062 | |||||||
| NDB | locus_tag | CELE_Y54G2A.39 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00043062|UniProtKB=Q95XX5 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 3565458 | |||||||
| RefSeq | protein | NM_001380111.2 | |||||||
| NM_001028333.4 | |||||||||
| NR_132458.1 | |||||||||
| TrEMBL | UniProtAcc | Q60F71 | |||||||
| Q95XX5 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XX5 | |||||||
| RNAcentral | URSid | URS000084CB10 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 24 Sep 2004 09:39:54 | WBPerson1867 | Event | Created | |||
| 2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-80 | ||||
| Acquires_merge | WBGene00021874 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (55) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP4650 | ||||||||
| Ortholog (19) | |||||||||
| Paralog (38) | |||||||||
| Structured_description | Automated_description | Enriched in ASER; SIA; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-one chemicals including methylmercuric chloride; rotenone; and mianserin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G2A.39a | |||||||
| Y54G2A.39b | |||||||||
| Corresponding_transcript | Y54G2A.39c | ||||||||
| Y54G2A.39a.1 | |||||||||
| Y54G2A.39b.1 | |||||||||
| Other_sequence | CRC06528_1 | ||||||||
| CR05441 | |||||||||
| Associated_feature | WBsf995791 | ||||||||
| WBsf1016963 | |||||||||
| WBsf228058 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057474 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1016166 | ||||||||
| Expr1018934 | |||||||||
| Expr1160902 | |||||||||
| Expr1160919 | |||||||||
| Expr2010212 | |||||||||
| Expr2028453 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (223) | |||||||||
| Map_info | Map | IV | Position | -6.73554 | Error | 0.001155 | |||
| Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
