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WormBase Tree Display for Gene: WBGene00041976

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Name Class

WBGene00041976SMapS_parentSequencecb25.NA_025
IdentityVersion2
NameCGC_nameCbr-nphp-2From_analysisInferred_from_orthology
Sequence_nameCBG23685
Molecular_nameCBG23685a
CBG23685a.1
CBP48377
CBG23685b
CBP48352
CBG23685b.1
Other_nameCBG_23685Accession_evidenceNDBHE601366
Public_nameCbr-nphp-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
211 Apr 2012 13:56:30WBPerson2970Name_changeCGC_nameCbr-nphp-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnphp
AlleleWBVar00036152
RNASeq_FPKMWBls:00000020.46429From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.24535From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.55384From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.71791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.440784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.00907From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.04421From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.177834From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.355669From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.269706From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.453449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.936906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.977663From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.01842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.09842From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.14492From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.32777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.34308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.387535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.806656From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.27302From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.62486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.71576From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.75555From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.20314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.40956From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.185854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.572893From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.817731From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.06257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.12762From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.68917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.116917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.147252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.150582From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.153912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.28012From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.7024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.394972From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.420015From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.636032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.763576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.056314From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.11953From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.146705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.394632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.101509From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.152814From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.319233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.572893From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.25625From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.669216From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.21097From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (14)
ParalogWBGene00031034Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Domain of unknown function DUF3447; Ankyrin repeats (3 copies); Ankyrin repeat; and Ankyrin repeat-containing domain superfamily. Is an ortholog of C. elegans nphp-2. In C. elegans, nphp-2 is involved in protein localization to ciliary inversin compartment.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23685a
CBG23685b
Corresponding_CDS_historyCBG23685:bp194
CBG23685:bp259
Corresponding_transcriptCBG23685a.1
CBG23685b.1
Other_sequenceJI468614.1
JI479380.1
Acan_isotig04188
ASC39508_1
JI467427.1
FE909386.1
JI166629.1
JI166462.1
Experimental_infoExpr_patternExpr1053423
Microarray_resultsGPL8303_CB6_WBGene00041976_A
GPL8303_CB6_WBGene00041976_B
GPL14143_CBG23685_2385-2444_0.900_15_C
GPL14143_CBG23685_2483-2542_0.946_4_B
GPL14143_CBG23685_2561-2620_0.966_1_A
MethodGene