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WormBase Tree Display for Gene: WBGene00039900

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Name Class

WBGene00039900SMapS_parentSequencecb25.fpc4206c
IdentityVersion1
NameSequence_nameCBG21015
Molecular_nameCBG21015
CBG21015.1
CBP20022
Other_nameCBG_21015Accession_evidenceNDBHE600928
Public_nameCBG21015
DB_infoDatabaseNDBlocus_tagCBG_21015
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000021.22142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.58019From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.0686From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.45056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.65567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.34906From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.36213From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.656161From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.09901From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.54187From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
1.9142From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.54456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.69739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.97181From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.24624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1.42514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.04825From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.4149From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.45758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.130473From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.309231From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.87349From_analysisRNASeq.briggsae.WBls:0000027.control_mean
5.18076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.722215From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.1352From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
1.68892From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.905566From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.099762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.980143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.32119From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.66224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.14109From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.82222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000412.48603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.56681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.81158From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.81546From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.06411From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.12937From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.09674From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.13809From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.73649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.84576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.15874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.69394From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.9659From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.05148From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.32888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.59647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.35228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.86363From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.87271From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.05148From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.13893From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.14886From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.19991From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
OrthologWBGene00012462Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00084805Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CSP26.g15058Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP39.g4201Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5667Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Csp5_scaffold_00624.g13685Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_006595Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrII_pilon.g6084Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domain: F-box protein she-1-like. Is an ortholog of C. elegans Y17G7B.8. In C. elegans, Y17G7B.8 is involved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21015
Corresponding_transcriptCBG21015.1
Experimental_infoExpr_patternExpr1069698
Microarray_resultsGPL8303_CB6_WBGene00039900_A
GPL14143_CBG21015_925-984_0.862_2_A
MethodGene