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WormBase Tree Display for Gene: WBGene00038983

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Name Class

WBGene00038983SMapS_parentSequencecb25.fpc4152
IdentityVersion1
NameSequence_nameCBG19827
Molecular_nameCBG19827
CBG19827.1
CBP19750
Other_nameCBG_19827Accession_evidenceNDBHE601481
Public_nameCBG19827
DB_infoDatabaseNDBlocus_tagCBG_19827
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00127843
WBVar00039379
WBVar00127842
RNASeq_FPKMWBls:000000225.3666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
28.5682From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
30.7588From_analysisRNASeq.briggsae.WBls:0000002.control_mean
38.3416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
33.4549From_analysisRNASeq.briggsae.WBls:0000002.control_median
37.2982From_analysisRNASeq.briggsae.WBls:0000002.control_mean
56.9163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000368.1737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
74.1733From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
80.173From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
115.574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
87.9736From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000424.3059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
24.4611From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
24.6163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
24.0115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
24.4438From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
25.0712From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.9784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.111602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.132364From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.844835From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.29054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.737207From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.969139From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.34205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000358.02376From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.87884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.95444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.48405From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.75642From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.01365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.17874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004118.4566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
46.5685From_analysisRNASeq.briggsae.WBls:0000041.control_mean
52.036From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
52.7407From_analysisRNASeq.briggsae.WBls:0000041.control_median
53.4454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
62.3358From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
21.2781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
29.7042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
39.5427From_analysisRNASeq.briggsae.WBls:0000041.control_mean
40.8701From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006328.9773From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
29.2251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
30.8112From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
30.934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
34.4324From_analysisRNASeq.briggsae.WBls:0000063.control_mean
52.2142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
30.8726From_analysisRNASeq.briggsae.WBls:0000063.control_median
35.437From_analysisRNASeq.briggsae.WBls:0000063.control_mean
40.4603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010123.716From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
24.3059From_analysisRNASeq.briggsae.total_over_all_stages.control_median
24.5301From_analysisRNASeq.briggsae.total_over_all_stages.control_median
27.0914From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (64)
Paralog (20)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Short-chain dehydrogenase/reductase SDR; short chain dehydrogenase; and NAD(P)-binding domain superfamily. Is an ortholog of C. elegans H04M03.3.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19827
Corresponding_CDS_historyCBG19827:bp194
CBG19827:bp255
Corresponding_transcriptCBG19827.1
Other_sequenceCBC03655_1
CRC08634_1
CR07192
Experimental_infoExpr_patternExpr1055552
Microarray_resultsGPL8303_CB6_WBGene00038983_A
GPL8303_CB6_WBGene00038983_B
GPL8303_CB6_WBGene00038983_C
GPL14143_CBG19827_267-326_0.925_10_A
GPL14143_CBG19827_455-514_0.898_22_C
GPL14143_CBG19827_628-687_0.951_1_B
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene