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WormBase Tree Display for Gene: WBGene00038499

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Name Class

WBGene00038499SMapS_parentSequencecb25.fpc4126
IdentityVersion2
NameCGC_nameCbr-slc-17.7From_analysisInferred_from_orthology
Sequence_nameCBG19243
Molecular_nameCBG19243
CBG19243.1
CBP39418
Other_nameCBG_19243Accession_evidenceNDBHE601047
Public_nameCbr-slc-17.7
DB_infoDatabaseNDBlocus_tagCBG_19243
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
227 Jun 2014 16:03:40WBPerson2970Name_changeCGC_nameCbr-slc-17.7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classslc
RNASeq_FPKMWBls:00000023.29987From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.98971From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.13341From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
4.53586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.10824From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.29861From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.46381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000038.77546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
9.34794From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
9.92042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
6.71087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
8.46892From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000416.0858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
17.2425From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
18.3991From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
17.3405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
17.7155From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
17.8957From_analysisRNASeq.briggsae.WBls:0000004.control_mean
19.9375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000271.56759From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.47196From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.31161From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.89529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
23.9476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.18363From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.97061From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003515.6059From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.4723From_analysisRNASeq.briggsae.WBls:0000038.control_median
12.2839From_analysisRNASeq.briggsae.WBls:0000038.control_mean
14.9984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.0458From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.14504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
7.94624From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000411.30345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.15763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.15804From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.15844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.71185From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.2279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.45434From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.47728From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.79612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.0825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
3.12093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.20713From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.55388From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.07013From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
5.2907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.49927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.08915From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.3374From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001015.2279From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.4176From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.2593From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.358From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141987
00141988
Ortholog (30)
Paralog (56)
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Is an ortholog of C. elegans slc-17.7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19243
Corresponding_CDS_historyCBG19243:bp194
CBG19243:bp255
Corresponding_transcriptCBG19243.1
Other_sequence (19)
Experimental_infoExpr_patternExpr1066630
Microarray_resultsGPL8303_CB6_WBGene00038499_A
GPL8303_CB6_WBGene00038499_B
GPL14143_CBG19243_1345-1404_0.908_17_A
GPL14143_CBG19243_1542-1601_0.883_33_C
GPL14143_CBG19243_1691-1750_0.961_1_B
MethodGene