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WormBase Tree Display for Gene: WBGene00037805

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Name Class

WBGene00037805SMapS_parentSequencecb25.fpc4079b
IdentityVersion3
NameCGC_nameCbr-unc-49From_analysisInferred_from_orthology
Sequence_nameCBG18364
Molecular_name (14)
Other_nameCBG_18364Accession_evidenceNDBHE600936
Public_nameCbr-unc-49
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-unc-49
330 Nov 2011 09:43:12WBPerson1849EventAcquires_mergeWBGene00037806
Acquires_mergeWBGene00037806
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000213.6357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.2976From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
14.5599From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.7463From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.8937From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.9667From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.89523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.289415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.20623From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.12304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.63086From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.48013From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.8251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
7.14102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
8.98306From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
10.1133From_analysisRNASeq.briggsae.WBls:0000004.control_mean
10.4731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
10.9637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
11.1634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:000002712.5879From_analysisRNASeq.briggsae.WBls:0000027.control_mean
27.5537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.88612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
7.3239From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.0724From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.1462From_analysisRNASeq.briggsae.WBls:0000027.control_mean
18.8209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003521.3816From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7032From_analysisRNASeq.briggsae.WBls:0000038.control_mean
10.7874From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.7192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.2392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.99877From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.85563From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004112.0134From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.53089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.78023From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.87541From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.97059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.07378From_analysisRNASeq.briggsae.WBls:0000041.control_mean
10.3481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
5.26509From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.36713From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.55958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000632.11881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.21939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.79539From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.96975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.1694From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.74368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.88257From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.53606From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.36932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.0006From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.3239From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.87543From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.87079From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141331
00141332
00141333
00141334
00141335
00141336
00141337
OrthologWBGene00006784Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00144273Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00055771Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g4076Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2958Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4857Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9434Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15298Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14166Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2620Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13596Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4329Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g436Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_12910.g23984Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g9603Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7353Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00128.g5094Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11418Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010455Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30124910Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00226150Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g8886Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00130247Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133897Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244711Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00113693Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263154Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287048Trichuris murisFrom_analysisWormBase-Compara
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable GABA-A receptor activity and extracellular ligand-gated monoatomic ion channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-49. In C. elegans, unc-49 is involved in gamma-aminobutyric acid signaling pathway; locomotory behavior; and regulation of backward locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDS (4)
Corresponding_CDS_historyCBG18364:bp229
CBG18364:bp255
Corresponding_transcriptCBG18364a.1
CBG18364b.1
CBG18364c.1
CBG18364c.2
CBG18364c.3
CBG18364d.1
Other_sequence (53)
Experimental_infoExpr_patternExpr1057489
Expr1067445
Microarray_resultsGPL8303_CB6_WBGene00037805_A
GPL8303_CB6_WBGene00037805_B
GPL8303_CB6_WBGene00037806_A
GPL8303_CB6_WBGene00037806_B
GPL14143_CBG18364_749-808_0.845_38_B
GPL14143_CBG18364_922-981_0.755_93_C
GPL14143_CBG18364_991-1050_0.937_6_A
GPL14143_CBG18365_521-580_0.725_79_C
GPL14143_CBG18365_645-704_0.872_17_A
GPL14143_CBG18365_1069-1128_0.966_1_B
MethodGene