Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00037480

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00037480SMapS_parentSequencecb25.fpc4079a
IdentityVersion2
NameCGC_nameCbr-pal-1From_analysisInferred_from_orthology
Sequence_nameCBG17980
Molecular_nameCBG17980
CBG17980.1
CBP41750
Other_nameCBG_17980Accession_evidenceNDBHE600963
Public_nameCbr-pal-1
DB_infoDatabaseNDBlocus_tagCBG_17980
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pal-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpal
RNASeq_FPKMWBls:000000253.091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
64.8069From_analysisRNASeq.briggsae.WBls:0000002.control_mean
70.1914From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
71.1383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
201.762From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
70.6648From_analysisRNASeq.briggsae.WBls:0000002.control_median
99.0457From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003151.573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
160.438From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
169.303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
162.968From_analysisRNASeq.briggsae.WBls:0000003.control_mean
168.027From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004103.983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
105.294From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
106.604From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
110.238From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
113.414From_analysisRNASeq.briggsae.WBls:0000004.control_mean
113.712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
132.534From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.479258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.567198From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.44407From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.28575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.20902From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.85085From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.29576From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000352.76834From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.09796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.2353From_analysisRNASeq.briggsae.WBls:0000038.control_mean
2.5605From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.59261From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.62471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.65802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:0000041101.793From_analysisRNASeq.briggsae.WBls:0000041.control_mean
116.191From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
120.697From_analysisRNASeq.briggsae.WBls:0000041.control_median
125.202From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
145.627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
20.1508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
37.9225From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
51.0145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
82.6846From_analysisRNASeq.briggsae.WBls:0000041.control_mean
83.6028From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006334.1226From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
39.6434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
44.5959From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
49.7776From_analysisRNASeq.briggsae.WBls:0000063.control_mean
52.3459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
78.18From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
48.4709From_analysisRNASeq.briggsae.WBls:0000063.control_median
51.6579From_analysisRNASeq.briggsae.WBls:0000063.control_mean
61.0598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010134.1226From_analysisRNASeq.briggsae.total_over_all_stages.control_median
48.9841From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
47.8052From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.4911From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00140894
Ortholog (25)
ParalogWBGene00041462Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Is an ortholog of C. elegans pal-1. In C. elegans, pal-1 is involved in several processes, including cell fate commitment; embryonic pattern specification; and positive regulation of DNA-templated transcription.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17980
Corresponding_CDS_historyCBG17980:bp194
CBG17980:bp255
Corresponding_transcriptCBG17980.1
Other_sequence (21)
Experimental_infoExpr_patternExpr1064051
Microarray_resultsGPL8303_CB6_WBGene00037480_A
GPL8303_CB6_WBGene00037480_C
GPL8303_CB6_WBGene00037480_D
GPL8303_CB6_WBGene00037480_E
GPL14143_CBG17980_528-587_0.921_9_C
GPL14143_CBG17980_654-713_0.948_2_B
GPL14143_CBG17980_680-739_0.948_1_A
ReferenceWBPaper00032323
MethodGene