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WormBase Tree Display for Gene: WBGene00036118

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Name Class

WBGene00036118SMapS_parentSequencecb25.fpc4033c
IdentityVersion2
NameCGC_nameCbr-him-4From_analysisInferred_from_orthology
Sequence_nameCBG16045
Molecular_nameCBG16045
CBG16045.1
CBP42615
Other_nameCBG_16045Accession_evidenceNDBHE600961
Public_nameCbr-him-4
DB_infoDatabaseNDBlocus_tagCBG_16045
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:05WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-him-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhim
AlleleWBVar00123595
WBVar00123591
WBVar00123592
WBVar00123593
WBVar00123594
RNASeq_FPKMWBls:00000020.470799From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.498575From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.694541From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.11425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.806413From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.836171From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.26106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.329665From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.37576From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.421855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.309711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.353744From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.73518From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.93316From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.13113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.20898From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.23236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
3.3717From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.55086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002713.8922From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.35637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.22083From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.4898From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.59678From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.2886From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.01654From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.20518From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.711065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.828291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.82365From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.81901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.42938From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.35914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000414.78195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.07114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
5.24033From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.40952From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.08543From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.0791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.39708From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.95957From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.01863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.65135From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.99815From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.38099From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.43089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.4467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.246499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.25054From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.18957From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001012.73518From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.09035From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.56613From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.03795From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (31)
ParalogWBGene00028512Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033078Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035708Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036095Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036697Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037145Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038458Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; von Willebrand factor A-like domain superfamily; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Immunoglobulin V-set domain; and Immunoglobulin subtype. Is an ortholog of C. elegans him-4. In C. elegans, him-4 is involved in basement membrane disassembly.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG16045
Corresponding_CDS_historyCBG16045:bp255
Corresponding_transcriptCBG16045.1
Other_sequenceJI230541.1
JI211893.1
HG08207
HGC09252_1
Experimental_infoExpr_patternExpr1064129
Microarray_resultsGPL8303_CB6_WBGene00036118_A
GPL14143_CBG16045_2594-2653_0.812_3_C
GPL14143_CBG16045_5986-6045_0.812_2_A
GPL14143_CBG16045_6902-6961_0.812_1_B
MethodGene