WormBase Tree Display for Gene: WBGene00035094

WBGene00035094 SMap: S_parent: Sequence: cb25.fpc3857a
  Identity: Version: 3
    Name: CGC_name: Cbr-syx-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG14670
      Molecular_name: CBG14670
        CBG14670.1
        CBP18085
      Other_name: Cbr-syn-1 From_analysis: Inferred_from_orthology
        CBG_14670 Accession_evidence: NDB HE600983
      Public_name: Cbr-syx-3
    DB_info: Database: NDB locus_tag CBG_14670
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:04 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-syn-1
        3 16 Apr 2010 14:36:35 WBPerson2970 Name_change: CGC_name: Cbr-syx-3
                Other_name: Cbr-syn-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    RNASeq_FPKM: WBls:0000002 10.963 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        14.738 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        9.02817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        9.12283 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        6.82844 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        9.0755 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        9.92936 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 11.5115 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        8.4832 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        9.99735 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        5.62585 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        8.54018 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 22.1798 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        22.793 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        23.4062 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        22.2251 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        23.1166 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        24.1114 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        29.6294 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.921465 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        17.419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.40153 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        7.24733 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        10.7033 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        7.05241 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        8.11132 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 9.85447 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.4544 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        11.3525 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        15.3518 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2.7433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        9.55637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        9.75099 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 6.12996 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        6.92782 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        7.1236 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        7.17707 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        7.31937 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        8.33112 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        10.2148 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        7.82524 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        8.01651 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        9.17599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 11.298 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        6.36397 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        6.58987 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        7.48362 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        7.80378 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        7.03507 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        7.6437 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        9.26104 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 9.12283 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        9.90588 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        10.8961 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        9.4087 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00138588
      00138589
    Ortholog (29)
    Paralog: WBGene00026391 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026410 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029415 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00030474 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033368 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033438 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00041656 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-3. In C. elegans, syx-3 is involved in positive regulation of defecation and regulation of muscle contraction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG14670
    Corresponding_CDS_history: CBG14670:bp194
    Corresponding_transcript: CBG14670.1
    Other_sequence: Hbac_isotig05554
      Acan_isotig09475
  Experimental_info: Expr_pattern: Expr1066456
    Microarray_results: GPL8303_CB6_WBGene00035094_A
      GPL8303_CB6_WBGene00035094_B
      GPL14143_CBG14670_215-274_0.782_60_C
      GPL14143_CBG14670_619-678_0.847_11_B
      GPL14143_CBG14670_823-882_0.872_2_A
  Method: Gene