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WormBase Tree Display for Gene: WBGene00034414

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Name Class

WBGene00034414SMapS_parentSequencecb25.fpc3752a
IdentityVersion5
NameCGC_nameCbr-cec-8From_analysisInferred_from_orthology
Sequence_nameCBG13680
Molecular_nameCBG13680
CBG13680.1
CBP17902
Other_nameCBG_13680Accession_evidenceNDBHE600943
Public_nameCBG13680
DB_infoDatabaseNDBlocus_tagCBG_13680
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
230 Sep 2011 16:49:21WBPerson2970Name_changeCGC_nameCbr-cec-8
308 May 2019 10:09:28WBPerson1983Name_changeCGC_nameRemoved
401 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-cec-8
504 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameRemoved
628 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCbr-cec-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcec
RNASeq_FPKMWBls:00000024.32423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.00788From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.50221From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.17451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.54723From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.66606From_analysisRNASeq.briggsae.WBls:0000002.control_median
4.76346From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003101.257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
82.2645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
91.7607From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
47.9982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
77.1732From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000455.8482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
58.0044From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
60.1606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.1611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
55.9939From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
57.4602From_analysisRNASeq.briggsae.WBls:0000004.control_mean
61.1371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002711.5848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.49279From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2.1037From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.06043From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.84425From_analysisRNASeq.briggsae.WBls:0000027.control_median
7.85207From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003512.7832From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.7028From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
13.2292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.52683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
5.53798From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.7492From_analysisRNASeq.briggsae.WBls:0000038.control_mean
8.12039From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:00000411.18086From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.13195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.2898From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.43605From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.74015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.10626From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.17421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.37316From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.45718From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.90553From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.179422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.449551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.501379From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.696482From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.750879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.60118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.626129From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.894007From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.88163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010115.6375From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.00788From_analysisRNASeq.briggsae.total_over_all_stages.control_median
18.3819From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.27293From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00137936
00137937
Contained_in_operonCBOPA0915
OrthologWBGene00021913Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
Cnig_chr_IV.g12164Caenorhabditis nigoniFrom_analysisWormBase-Compara
chrIII_pilon.g6753Caenorhabditis elegansFrom_analysisWormBase-Compara
ParalogWBGene00028275Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032288Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038073Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable methylated histone binding activity. Predicted to be involved in chromosome attachment to the nuclear envelope. Is an ortholog of C. elegans cec-8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13680
Corresponding_CDS_historyCBG13680:bp194
Corresponding_transcriptCBG13680.1
Other_sequenceEL890566.1
Experimental_infoExpr_patternExpr1050848
Microarray_resultsGPL8303_CB6_WBGene00034414_A
GPL8303_CB6_WBGene00034414_B
GPL8303_CB6_WBGene00034414_C
GPL8303_CB6_WBGene00034414_D
GPL8303_CB6_WBGene00034414_E
GPL14143_CBG13680_1741-1800_0.943_1_A
Remark[190507 pad] The CGC name Cbr-cec-8 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[200204 pad] The CGC name Cbr-cec-8 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene