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WormBase Tree Display for Gene: WBGene00033838

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Name Class

WBGene00033838SMapS_parentSequencecb25.fpc2888c
IdentityVersion2
NameCGC_nameCbr-nfi-1From_analysisInferred_from_orthology
Sequence_nameCBG12989
Molecular_name (18)
Other_nameCBG_12989Accession_evidenceNDBHE600938
Public_nameCbr-nfi-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-nfi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnfi
RNASeq_FPKMWBls:000000223.0003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
24.8653From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.092From_analysisRNASeq.briggsae.WBls:0000002.control_mean
30.4103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
27.6378From_analysisRNASeq.briggsae.WBls:0000002.control_median
30.2158From_analysisRNASeq.briggsae.WBls:0000002.control_mean
42.5874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000393.6837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
93.9574From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
94.2311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
111.179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
99.6979From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000441.8774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
44.3266From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
46.7758From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
39.9654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
41.0096From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
42.09From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
42.3436From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.805945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.1915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.37586From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.12443From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.84586From_analysisRNASeq.briggsae.WBls:0000027.control_median
5.67229From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.31587From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000359.84171From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.3304From_analysisRNASeq.briggsae.WBls:0000038.control_mean
10.9213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
17.105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.18582From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
8.10941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
9.51536From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:000004117.2752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
49.3336From_analysisRNASeq.briggsae.WBls:0000041.control_mean
56.3431From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
58.461From_analysisRNASeq.briggsae.WBls:0000041.control_median
60.579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
63.1373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
18.4717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
22.9841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
39.6636From_analysisRNASeq.briggsae.WBls:0000041.control_median
39.7984From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006329.0852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
29.6145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
31.8128From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
34.9276From_analysisRNASeq.briggsae.WBls:0000063.control_mean
35.2343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
48.8914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.9607From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
30.7136From_analysisRNASeq.briggsae.WBls:0000063.control_median
33.5998From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010123.0003From_analysisRNASeq.briggsae.total_over_all_stages.control_median
29.2492From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.913From_analysisRNASeq.briggsae.total_over_all_stages.control_median
31.5998From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137252
00137253
00137254
Ortholog (28)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans nfi-1. In C. elegans, nfi-1 is involved in several processes, including positive regulation of transcription by RNA polymerase II; regulation of egg-laying behavior; and regulation of pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12989a
CBG12989b
CBG12989c
CBG12989d
CBG12989e
CBG12989f
Corresponding_CDS_historyCBG12989:bp194
CBG12989:bp255
Corresponding_transcriptCBG12989a.1
CBG12989b.1
CBG12989c.1
CBG12989d.1
CBG12989e.1
CBG12989f.1
Other_sequenceJI165653.1
CR08418
CRC02685_1
CBC09830_1
JI475212.1
Experimental_infoExpr_patternExpr1060980
Microarray_resultsGPL8303_CB6_WBGene00033838_A
GPL8303_CB6_WBGene00033838_B
GPL14143_CBG12989_699-758_0.752_70_A
GPL14143_CBG12989_785-844_0.774_35_C
GPL14143_CBG12989_1616-1675_0.804_2_B
MethodGene