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WormBase Tree Display for Gene: WBGene00030277

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Name Class

WBGene00030277SMapS_parentSequencecb25.fpc2032
IdentityVersion2
NameCGC_nameCbr-haf-6From_analysisInferred_from_orthology
Sequence_nameCBG08495
Molecular_nameCBG08495
CBG08495.1
CBP38553
Other_nameCBG_08495Accession_evidenceNDBHE601507
Public_nameCbr-haf-6
DB_infoDatabaseNDBlocus_tagCBG_08495
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-haf-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhaf
AlleleWBVar00053084
WBVar00113635
WBVar00010062
WBVar00021324
WBVar00021339
WBVar00021329
WBVar00021344
WBVar00021349
WBVar00053079
WBVar00021334
RNASeq_FPKMWBls:000000213.6642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
18.6446From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.661From_analysisRNASeq.briggsae.WBls:0000002.control_mean
23.6742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
13.0894From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
16.1544From_analysisRNASeq.briggsae.WBls:0000002.control_median
17.2681From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000340.6921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
41.39From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
42.088From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
44.1352From_analysisRNASeq.briggsae.WBls:0000003.control_mean
49.6256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000421.5296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
22.1938From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
22.8581From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
17.7545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
22.1721From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.9063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
25.8121From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002715.6707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.60207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.66229From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
6.97835From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.5456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
8.87016From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.10394From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003517.0739From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.1433From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
16.578From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.3901From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.6368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
23.0262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.50577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004124.2035From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
33.0806From_analysisRNASeq.briggsae.WBls:0000041.control_mean
34.9402From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
35.4706From_analysisRNASeq.briggsae.WBls:0000041.control_median
36.0011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
37.1776From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
18.3136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
24.6168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
29.2088From_analysisRNASeq.briggsae.WBls:0000041.control_mean
29.7785From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006318.9859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
19.5966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
19.7545From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
20.6096From_analysisRNASeq.briggsae.WBls:0000063.control_mean
20.6381From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
24.0727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.1963From_analysisRNASeq.briggsae.WBls:0000063.control_median
20.9584From_analysisRNASeq.briggsae.WBls:0000063.control_mean
22.7026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010119.6368From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.0679From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
19.6957From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.8246From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133684
00133685
00133686
00133687
00133688
Ortholog (30)
Paralog (29)
Structured_descriptionAutomated_descriptionPredicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans haf-6. In C. elegans, haf-6 is involved in regulatory ncRNA-mediated post-transcriptional gene silencing.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08495
Corresponding_CDS_historyCBG08495:bp194
CBG08495:bp255
Corresponding_transcriptCBG08495.1
Other_sequence (34)
Experimental_infoExpr_patternExpr1064559
Microarray_resultsGPL8303_CB6_WBGene00030277_A
GPL14143_CBG08495_1127-1186_0.898_13_C
GPL14143_CBG08495_1439-1498_0.943_1_B
GPL14143_CBG08495_1761-1820_0.822_44_A
MethodGene