WormBase Tree Display for Gene: WBGene00029944

WBGene00029944 SMap: S_parent: Sequence: cb25.fpc1402c
  Identity: Version: 2
    Name: CGC_name: Cbr-vps-45 From_analysis: Inferred_from_orthology
      Sequence_name: CBG08081
      Molecular_name: CBG08081
        CBG08081.1
        CBP07830
      Other_name: CBG_08081 Accession_evidence: NDB HE600971
      Public_name: Cbr-vps-45
    DB_info: Database: NDB locus_tag CBG_08081
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:59 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-vps-45
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    Allele: WBVar00136810
      WBVar00136811
      WBVar00136809
    RNASeq_FPKM: WBls:0000002 11.2135 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        3.35599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        6.30783 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        6.95911 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        3.47991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        4.89387 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        6.08931 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 11.1781 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        7.08036 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        9.12923 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        10.9187 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        9.72572 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 18.4257 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        18.4571 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        18.4885 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        16.8879 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        17.2942 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        17.84 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        18.1038 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.32813 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        14.4004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        5.24284 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.50033 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        3.67254 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        4.85027 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 5.6926 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.5229 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        3.23255 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        4.27924 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        4.59424 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        4.90925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        5.98598 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 4.05743 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        4.5433 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        4.67355 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        4.67799 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.81268 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        5.28079 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        4.72123 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        4.76695 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.8114 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.45296 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.80036 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        2.87815 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        3.07272 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        3.76502 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        4.75263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        3.29959 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        3.41887 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        5.40683 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 4.81268 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.51647 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        5.09502 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        7.23462 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00133355
    Ortholog (30)
    Paralog: WBGene00027015 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034298 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035639 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00036613 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037807 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in vesicle-mediated transport. Is an ortholog of C. elegans vps-45. In C. elegans, vps-45 is involved in pinocytosis and receptor-mediated endocytosis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08081
    Corresponding_CDS_history: CBG08081:bp194
    Corresponding_transcript: CBG08081.1
    Other_sequence (43)
  Experimental_info: Expr_pattern: Expr1052758
    Microarray_results: GPL8303_CB6_WBGene00029944_A
      GPL8303_CB6_WBGene00029944_B
      GPL14143_CBG08081_236-295_0.810_2_C
      GPL14143_CBG08081_595-654_0.798_9_B
      GPL14143_CBG08081_650-709_0.805_4_A
  Method: Gene