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WormBase Tree Display for Gene: WBGene00029555

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Name Class

WBGene00029555SMapS_parentSequencecb25.fpc0829
IdentityVersion2
NameCGC_nameCbr-sym-1From_analysisInferred_from_orthology
Sequence_nameCBG07556
Molecular_nameCBG07556
CBG07556.1
CBP07677
Other_nameCBG_07556Accession_evidenceNDBHE601041
Public_nameCbr-sym-1
DB_infoDatabaseNDBlocus_tagCBG_07556
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-sym-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsym
RNASeq_FPKMWBls:0000002106.499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
29.5834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
74.3574From_analysisRNASeq.briggsae.WBls:0000002.control_mean
86.9897From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
32.3513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
59.6705From_analysisRNASeq.briggsae.WBls:0000002.control_median
63.8559From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003124.238From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
168.08From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
80.3955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
102.746From_analysisRNASeq.briggsae.WBls:0000003.control_mean
59.7618From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004241.925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
248.444From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
254.963From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
243.903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
254.629From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
263.539From_analysisRNASeq.briggsae.WBls:0000004.control_mean
322.275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027130.559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
13.6929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
33.2934From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
59.1818From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.3702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
26.8318From_analysisRNASeq.briggsae.WBls:0000027.control_median
49.4789From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035615.376From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038108.282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
137.031From_analysisRNASeq.briggsae.WBls:0000038.control_median
156.622From_analysisRNASeq.briggsae.WBls:0000038.control_mean
165.779From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
259.387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
93.0406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004113.7928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.25266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.55285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.05648From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.56011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
5.53961From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.25592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.84659From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.14033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.59244From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.06449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.11377From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.53269From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.96236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.00929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.394527From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.82723From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.29859From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:0000101104.787From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
29.5834From_analysisRNASeq.briggsae.total_over_all_stages.control_median
104.682From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
30.9674From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (27)
ParalogWBGene00026832Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat, typical subtype; Leucine-rich repeat; BspA type Leucine rich repeat region (6 copies); Leucine-rich repeat domain superfamily; and Leucine rich repeat. Is an ortholog of C. elegans sym-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07556
Corresponding_CDS_historyCBG07556:bp194
Corresponding_transcriptCBG07556.1
Other_sequence (54)
Experimental_infoExpr_patternExpr1056428
Microarray_resultsGPL8303_CB6_WBGene00029555_A
GPL8303_CB6_WBGene00029555_B
GPL8303_CB6_WBGene00029555_C
GPL8303_CB6_WBGene00029555_D
GPL8303_CB6_WBGene00029555_E
GPL14143_CBG07556_797-856_0.784_30_C
GPL14143_CBG07556_1267-1326_0.741_94_B
GPL14143_CBG07556_1321-1380_0.607_257_A
MethodGene