WormBase Tree Display for Gene: WBGene00028638

WBGene00028638 SMap: S_parent: Sequence: cb25.fpc0156
  Identity: Version: 1
    Name: Sequence_name: CBG06343
      Molecular_name: CBG06343
        CBG06343.1
        CBP07445
      Other_name: CBG_06343 Accession_evidence: NDB HE601320
      Public_name: CBG06343
    DB_info: Database: NDB locus_tag CBG_06343
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000002 17.7104 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        38.9942 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        5.87858 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.25854 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        14.1378 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        18.2871 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        20.017 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.280176 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.560351 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.653944 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        1.40148 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.296638 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.593276 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.490485 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.51488 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.644209 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.700058 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 12.8369 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.14213 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        28.8642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        7.50424 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        18.1842 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        23.9678 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        57.3607 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 25.662 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 13.7464 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        21.0303 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        30.5456 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        39.738 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        40.0609 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        84.1143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 3.89568 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        4.32427 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        4.4588 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        4.59332 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        5.22738 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        8.09623 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        1.72184 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        5.00456 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        7.39604 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        30.8735 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        38.0603 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        38.0726 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        38.6683 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        39.5663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        26.8988 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        38.0664 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        7.02554 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 13.7464 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        21.8945 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        19.2558 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        7.80023 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    Ortholog (71)
    Paralog (21)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: CUB-like domain. Is an ortholog of C. elegans F55G11.4; F55G11.6; and F55G11.7. In C. elegans, F55G11.4 is involved in defense response to Gram-negative bacterium. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06343
    Corresponding_CDS_history: CBG06343:bp194
    Corresponding_transcript: CBG06343.1
  Experimental_info: Expr_pattern: Expr1061490
    Microarray_results: GPL8303_CB6_WBGene00028638_A
      GPL8303_CB6_WBGene00028638_B
      GPL14143_CBG06343_524-583_0.917_6_A
  Method: Gene