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WormBase Tree Display for Gene: WBGene00028263

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Name Class

WBGene00028263SMapS_parentSequencecb25.fpc0143a
IdentityVersion2
NameCGC_nameCbr-pam-1From_analysisInferred_from_orthology
Sequence_nameCBG05905
Molecular_nameCBG05905a
CBG05905a.1
CBP01616
CBG05905b
CBP47505
CBG05905b.1
Other_nameCBG_05905Accession_evidenceNDBHE600909
Public_nameCbr-pam-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pam-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpam
RNASeq_FPKMWBls:0000002110.462From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
126.661From_analysisRNASeq.briggsae.WBls:0000002.control_mean
133.569From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
135.953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
130.261From_analysisRNASeq.briggsae.WBls:0000002.control_mean
134.761From_analysisRNASeq.briggsae.WBls:0000002.control_median
141.059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003100.284From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
77.2266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
88.7553From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
100.288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
92.5995From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000446.7119From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
50.5942From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
54.4765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
49.2927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
49.6452From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
51.3693From_analysisRNASeq.briggsae.WBls:0000004.control_mean
56.72From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002725.9849From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
42.5141From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.6835From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
93.8738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
32.5356From_analysisRNASeq.briggsae.WBls:0000027.control_median
39.0863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
41.6571From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003583.4664From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038118.785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
54.9329From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
64.8363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
78.048From_analysisRNASeq.briggsae.WBls:0000038.control_median
82.4535From_analysisRNASeq.briggsae.WBls:0000038.control_mean
91.2597From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041180.686From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
206.843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
207.458From_analysisRNASeq.briggsae.WBls:0000041.control_mean
208.809From_analysisRNASeq.briggsae.WBls:0000041.control_median
210.774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
231.531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
176.468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
186.1From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
196.471From_analysisRNASeq.briggsae.WBls:0000041.control_median
198.734From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:0000063174.639From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
182.271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
184.168From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
187.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
203.874From_analysisRNASeq.briggsae.WBls:0000063.control_mean
291.163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
167.493From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
183.219From_analysisRNASeq.briggsae.WBls:0000063.control_median
197.811From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101113.467From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
93.8738From_analysisRNASeq.briggsae.total_over_all_stages.control_median
112.018From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
97.0789From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00131711
00131712
00131713
Ortholog (43)
Paralog (12)
Structured_descriptionAutomated_descriptionPredicted to enable metallopeptidase activity and zinc ion binding activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans pam-1. In C. elegans, pam-1 is involved in several processes, including exit from meiosis; first cell cycle pseudocleavage; and regulation of reproductive process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05905a
CBG05905b
Corresponding_CDS_historyCBG05905:bp194
CBG05905a:bp258
Corresponding_transcriptCBG05905a.1
CBG05905b.1
Other_sequence (64)
Experimental_infoExpr_patternExpr1068477
Microarray_resultsGPL8303_CB6_WBGene00028263_A
GPL8303_CB6_WBGene00028263_B
GPL14143_CBG05905_2210-2269_0.926_6_C
GPL14143_CBG05905_2515-2574_0.954_1_B
GPL14143_CBG05905_2652-2711_0.933_3_A
Expression_clusterWBPaper00051425:CB_L1_vs_embryo_downregulated
WBPaper00051425:CB_L4_vs_embryo_downregulated
MethodGene