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WormBase Tree Display for Gene: WBGene00027824

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Name Class

WBGene00027824SMapS_parentSequencecb25.fpc0107
IdentityVersion2
NameCGC_nameCbr-nhr-78From_analysisInferred_from_orthology
Sequence_nameCBG05363
Molecular_nameCBG05363
CBG05363.1
CBP07065
Other_nameCBG_05363Accession_evidenceNDBHE601337
Public_nameCbr-nhr-78
DB_infoDatabaseNDBlocus_tagCBG_05363
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-nhr-78
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (17)
RNASeq_FPKMWBls:00000022.50972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
3.19643From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3.97411From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.21619From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.42172From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.64701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
3.89234From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.28265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
5.37897From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
6.47529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
5.53046From_analysisRNASeq.briggsae.WBls:0000003.control_mean
5.83345From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000044.78401From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.55864From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
6.33326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
5.78676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
5.93945From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
6.17885From_analysisRNASeq.briggsae.WBls:0000004.control_mean
8.05076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.106332From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.51373From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
1.75957From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.65865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.13558From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.38867From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.26361From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353.13994From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.05804From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.12592From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.97592From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.10202From_analysisRNASeq.briggsae.WBls:0000038.control_median
5.07811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.64163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000412.25254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.5318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.67793From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.70307From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.87435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.05302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.78312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2.82874From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.02344From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.64584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.70175From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.72554From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.37662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.98259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.87231From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.05108From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.72511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001013.12592From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.54459From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.23002From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.82811From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00131260
00131261
00131262
00131263
Ortholog (28)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-78.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG05363
Corresponding_CDS_historyCBG05363:bp194
CBG05363:bp255
Corresponding_transcriptCBG05363.1
Other_sequenceSRC05308_1
FC809976.1
FC815341.1
CR10298
Experimental_infoExpr_patternExpr1070243
Microarray_resultsGPL8303_CB6_WBGene00027824_A
GPL14143_CBG05363_756-815_0.930_1_C
GPL14143_CBG05363_849-908_0.911_10_B
GPL14143_CBG05363_974-1033_0.916_7_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene