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WormBase Tree Display for Gene: WBGene00027259

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Name Class

WBGene00027259SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-nxf-2From_analysisInferred_from_orthology
Sequence_nameCBG04621
Molecular_nameCBG04621
CBG04621.1
CBP28505
Other_nameCBG_04621Accession_evidenceNDBHE601135
Public_nameCbr-nxf-2
DB_infoDatabaseNDBlocus_tagCBG_04621
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-nxf-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnxf
AlleleWBVar00109578
RNASeq_FPKMWBls:000000213.719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.8093From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.9847From_analysisRNASeq.briggsae.WBls:0000002.control_mean
19.4258From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
17.1175From_analysisRNASeq.briggsae.WBls:0000002.control_median
18.1458From_analysisRNASeq.briggsae.WBls:0000002.control_mean
24.6293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000319.0785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
26.0902From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
33.1018From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
26.539From_analysisRNASeq.briggsae.WBls:0000003.control_mean
27.4368From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000411.1565From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
11.4711From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
11.7856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
11.4728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
11.6679From_analysisRNASeq.briggsae.WBls:0000004.control_mean
11.9509From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
11.9738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.253256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.65293From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.20453From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.70741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.64663From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.31348From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3.64033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.13218From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.3143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.27791From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.56546From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
6.91305From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.60458From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.26064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004113.8257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
25.7964From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
29.3892From_analysisRNASeq.briggsae.WBls:0000041.control_median
30.4825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
30.5814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
15.3875From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.2215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
22.2588From_analysisRNASeq.briggsae.WBls:0000041.control_median
22.4658From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006319.3445From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
22.5623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
22.7765From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
23.9627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
27.4212From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
20.9935From_analysisRNASeq.briggsae.WBls:0000063.control_mean
23.3696From_analysisRNASeq.briggsae.WBls:0000063.control_median
29.2382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010111.7856From_analysisRNASeq.briggsae.total_over_all_stages.control_median
13.1752From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.144From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.0535From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00027261Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Nuclear RNA export factor; NTF2-like domain superfamily; and Leucine-rich repeat domain superfamily. Is an ortholog of C. elegans nxf-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04621
Corresponding_CDS_historyCBG04621:bp194
Corresponding_transcriptCBG04621.1
Other_sequenceCR01563
CRC03676_1
Experimental_infoExpr_patternExpr1064402
Microarray_resultsGPL8303_CB6_WBGene00027259_A
GPL8303_CB6_WBGene00027259_B
GPL8303_CB6_WBGene00027259_C
GPL14143_CBG04621_1159-1218_0.962_1_A
MethodGene