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WormBase Tree Display for Gene: WBGene00027125

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Name Class

WBGene00027125SMapS_parentSequencecb25.fpc0081
IdentityVersion2
NameCGC_nameCbr-ddo-2From_analysisInferred_from_orthology
Sequence_nameCBG04460
Molecular_nameCBG04460
CBG04460.1
CBP06757
Other_nameCBG_04460Accession_evidenceNDBHE601251
Public_nameCbr-ddo-2
DB_infoDatabaseNDBlocus_tagCBG_04460
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
230 Apr 2010 11:23:56WBPerson2970Name_changeCGC_nameCbr-ddo-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classddo
AlleleWBVar00047704
WBVar00047709
WBVar00109313
WBVar00047714
WBVar00047699
RNASeq_FPKMWBls:0000002123.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.038From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
77.4714From_analysisRNASeq.briggsae.WBls:0000002.control_mean
92.4412From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
22.2022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
57.3217From_analysisRNASeq.briggsae.WBls:0000002.control_median
63.6541From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000033.25845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
3.35392From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
3.44939From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.17444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
3.29409From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000047.25531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
7.6099From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.9645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.18857From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
7.36124From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
7.48296From_analysisRNASeq.briggsae.WBls:0000004.control_mean
9.64519From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000272.21273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
31.7492From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.22841From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
86.8064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
34.989From_analysisRNASeq.briggsae.WBls:0000027.control_median
39.7493From_analysisRNASeq.briggsae.WBls:0000027.control_mean
63.7496From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003561.1448From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038113.796From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.83948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
64.7619From_analysisRNASeq.briggsae.WBls:0000038.control_mean
66.3472From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
70.706From_analysisRNASeq.briggsae.WBls:0000038.control_median
75.0649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004116.1821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
34.0349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
40.8251From_analysisRNASeq.briggsae.WBls:0000041.control_mean
44.7532From_analysisRNASeq.briggsae.WBls:0000041.control_median
55.4715From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
57.6118From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
35.5492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
45.5103From_analysisRNASeq.briggsae.WBls:0000041.control_median
46.4567From_analysisRNASeq.briggsae.WBls:0000041.control_mean
79.8905From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006330.8477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
32.7286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
35.8749From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
37.3743From_analysisRNASeq.briggsae.WBls:0000063.control_mean
41.236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
46.1844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
38.5555From_analysisRNASeq.briggsae.WBls:0000063.control_median
44.8092From_analysisRNASeq.briggsae.WBls:0000063.control_mean
81.9839From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010134.0349From_analysisRNASeq.briggsae.total_over_all_stages.control_median
39.8871From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
33.3817From_analysisRNASeq.briggsae.total_over_all_stages.control_median
38.565From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130750
00130751
00130752
Contained_in_operonCBOPA0644
Ortholog (28)
ParalogWBGene00028081Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00034568Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038876Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable D-amino-acid oxidase activity and FAD binding activity. Predicted to be involved in D-amino acid metabolic process. Is an ortholog of C. elegans ddo-2. In C. elegans, ddo-2 is involved in aspartate catabolic process and obsolete oxidation-reduction process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04460
Corresponding_CDS_historyCBG04460:bp194
Corresponding_transcriptCBG04460.1
Other_sequence (45)
Experimental_infoExpr_patternExpr1060022
Microarray_resultsGPL8303_CB6_WBGene00027125_A
GPL14143_CBG04460_392-451_0.903_12_C
GPL14143_CBG04460_833-892_0.948_1_B
GPL14143_CBG04460_943-1002_0.935_3_A
MethodGene