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WormBase Tree Display for Gene: WBGene00025911

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Name Class

WBGene00025911SMapS_parentSequencecb25.fpc0058
IdentityVersion2
NameCGC_nameCbr-pqm-1From_analysisInferred_from_orthology
Sequence_nameCBG02954
Molecular_nameCBG02954
CBG02954.1
CBP06389
Other_nameCBG_02954Accession_evidenceNDBHE601438
Public_nameCbr-pqm-1
DB_infoDatabaseNDBlocus_tagCBG_02954
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-pqm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpqm
RNASeq_FPKMWBls:000000263.7924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
75.789From_analysisRNASeq.briggsae.WBls:0000002.control_mean
76.6713From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
86.9032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
79.598From_analysisRNASeq.briggsae.WBls:0000002.control_mean
81.7872From_analysisRNASeq.briggsae.WBls:0000002.control_median
91.0252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000031.96098From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
2.00186From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.04275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.712111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.57195From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000414.1544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.2775From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
14.4007From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
11.2942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
14.3574From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
14.3744From_analysisRNASeq.briggsae.WBls:0000004.control_mean
17.6655From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.6717From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
37.2274From_analysisRNASeq.briggsae.WBls:0000027.control_mean
4.29467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
95.7157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
125.12From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
53.6937From_analysisRNASeq.briggsae.WBls:0000027.control_median
59.2005From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:0000035167.427From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038145.408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
153.621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
49.0949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.40978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
88.8834From_analysisRNASeq.briggsae.WBls:0000038.control_mean
97.2514From_analysisRNASeq.briggsae.WBls:0000038.control_median
WBls:000004131.3115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
35.4651From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
43.5496From_analysisRNASeq.briggsae.WBls:0000041.control_median
47.1494From_analysisRNASeq.briggsae.WBls:0000041.control_mean
51.6342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
70.1867From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
54.7267From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.8476From_analysisRNASeq.briggsae.WBls:0000041.control_median
68.061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
71.702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006320.0981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
22.2015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
22.4262From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
25.3906From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.8027From_analysisRNASeq.briggsae.WBls:0000063.control_mean
38.8973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
23.9084From_analysisRNASeq.briggsae.WBls:0000063.control_median
33.5509From_analysisRNASeq.briggsae.WBls:0000063.control_mean
72.2916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010138.8973From_analysisRNASeq.briggsae.total_over_all_stages.control_median
60.0901From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
43.9961From_analysisRNASeq.briggsae.total_over_all_stages.control_median
58.2853From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (25)
ParalogWBGene00024085Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Zinc finger C2H2 superfamily and Zinc finger C2H2-type. Is an ortholog of C. elegans pqm-1. In C. elegans, pqm-1 is involved in several processes, including defense response to other organism; positive regulation of macromolecule biosynthetic process; and regulation of vitellogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02954
Corresponding_CDS_historyCBG02954:bp194
Corresponding_transcriptCBG02954.1
Other_sequence (15)
Experimental_infoExpr_patternExpr1068021
Microarray_resultsGPL8303_CB6_WBGene00025911_A
GPL8303_CB6_WBGene00025911_B
GPL14143_CBG02954_485-544_0.840_19_C
GPL14143_CBG02954_695-754_0.877_1_B
GPL14143_CBG02954_828-887_0.876_3_A
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
MethodGene