WormBase Tree Display for Gene: WBGene00022794
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| WBGene00022794 | SMap | S_parent | Sequence | ZK686 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | snu-23 | Person_evidence | WBPerson1659 | |||||
| Sequence_name | ZK686.4 | ||||||||
| Molecular_name | ZK686.4 | ||||||||
| ZK686.4.1 | |||||||||
| CE40676 | |||||||||
| ZK686.4.2 | |||||||||
| Other_name | CELE_ZK686.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | snu-23 | ||||||||
| DB_info | Database | AceView | gene | 3I860 | |||||
| WormQTL | gene | WBGene00022794 | |||||||
| WormFlux | gene | WBGene00022794 | |||||||
| NDB | locus_tag | CELE_ZK686.4 | |||||||
| Panther | gene | CAEEL|GeneID=176090|UniProtKB=P34670 | |||||||
| family | PTHR45986 | ||||||||
| NCBI | gene | 176090 | |||||||
| RefSeq | protein | NM_066291.4 | |||||||
| SwissProt | UniProtAcc | P34670 | |||||||
| TREEFAM | TREEFAM_ID | TF314475 | |||||||
| UniProt_GCRP | UniProtAcc | P34670 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Apr 2006 10:16:37 | WBPerson1867 | Event | Split_into | WBGene00044799 | ||||
| 3 | 11 Sep 2012 11:13:28 | WBPerson2970 | Name_change | CGC_name | snu-23 | ||||
| Split_into | WBGene00044799 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snu | ||||||||
| Allele | WBVar01838099 | ||||||||
| WBVar01500260 | |||||||||
| WBVar00840955 | |||||||||
| WBVar00840956 | |||||||||
| WBVar00840957 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00296436 | |||||||||
| WBVar00402137 | |||||||||
| WBVar00402138 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00043884 | ||||||||
| 00043885 | |||||||||
| 00043886 | |||||||||
| 00043887 | |||||||||
| 00043888 | |||||||||
| 00043889 | |||||||||
| 00126769 | |||||||||
| 00126770 | |||||||||
| 00126771 | |||||||||
| 00126772 | |||||||||
| Contained_in_operon | CEOP3452 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Is an ortholog of human ZMAT2 (zinc finger matrin-type 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK686.4 | |||||||
| Corresponding_CDS_history | ZK686.4:wp170 | ||||||||
| Corresponding_transcript | ZK686.4.1 | ||||||||
| ZK686.4.2 | |||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf651222 | ||||||||
| WBsf978324 | |||||||||
| WBsf993132 | |||||||||
| WBsf227024 | |||||||||
| Transcription_factor | WBTranscriptionFactor000873 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1013069 | ||||||||
| Expr1040084 | |||||||||
| Expr1163078 | |||||||||
| Expr2015983 | |||||||||
| Expr2034218 | |||||||||
| Drives_construct | WBCnstr00023969 | ||||||||
| Construct_product | WBCnstr00021763 | ||||||||
| WBCnstr00023969 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | III | Position | -0.60328 | |||||
| Positive | Positive_clone | ZK686 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033469 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048178 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064315 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
