WormBase Tree Display for Gene: WBGene00022647
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| WBGene00022647 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | slc-17.1 | Person_evidence | WBPerson260 | |||||
| WBPerson24428 | |||||||||
| Sequence_name | ZK54.1 | ||||||||
| Molecular_name | ZK54.1a | ||||||||
| ZK54.1a.1 | |||||||||
| CE31271 | |||||||||
| ZK54.1b | |||||||||
| CE39537 | |||||||||
| ZK54.1b.1 | |||||||||
| Other_name | C36E6.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| vst-1 | Person_evidence | WBPerson24428 | |||||||
| CELE_ZK54.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | slc-17.1 | ||||||||
| DB_info | Database | AceView | gene | XS76 | |||||
| WormQTL | gene | WBGene00022647 | |||||||
| WormFlux | gene | WBGene00022647 | |||||||
| NDB | locus_tag | CELE_ZK54.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022647|UniProtKB=Q23514 | |||||||
| family | PTHR11662 | ||||||||
| NCBI | gene | 181777 | |||||||
| RefSeq | protein | NM_001047835.5 | |||||||
| NM_001047836.7 | |||||||||
| TrEMBL | UniProtAcc | Q23514 | |||||||
| Q2PJ91 | |||||||||
| UniProt_GCRP | UniProtAcc | Q23514 | |||||||
| OMIM | gene | 604322 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 27 Jun 2014 15:53:55 | WBPerson2970 | Name_change | CGC_name | slc-17.1 | ||||
| 3 | 26 Jan 2024 23:28:21 | WBPerson51134 | Name_change | CGC_name | slc-17.1 | ||||
| Other_name | vst-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slc | ||||||||
| Allele (52) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00078712 | ||||||||
| 00078713 | |||||||||
| 00078714 | |||||||||
| 00078715 | |||||||||
| 00078716 | |||||||||
| 00126688 | |||||||||
| 00126689 | |||||||||
| Ortholog (34) | |||||||||
| Paralog (58) | |||||||||
| Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic anion transport. Located in sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in sialuria. Is an ortholog of human SLC17A5 (solute carrier family 17 member 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3659 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10933) | ||||
| Molecular_info | Corresponding_CDS | ZK54.1a | |||||||
| ZK54.1b | |||||||||
| Corresponding_CDS_history | ZK54.1:wp152 | ||||||||
| Corresponding_transcript | ZK54.1a.1 | ||||||||
| ZK54.1b.1 | |||||||||
| Other_sequence (46) | |||||||||
| Associated_feature | WBsf654742 | ||||||||
| WBsf654743 | |||||||||
| WBsf671527 | |||||||||
| WBsf1008930 | |||||||||
| WBsf1008931 | |||||||||
| WBsf1008932 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000487 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059497 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029614 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081656 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011703 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022048 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059498 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9424 | ||||||||
| Expr1026076 | |||||||||
| Expr1040006 | |||||||||
| Expr1162912 | |||||||||
| Expr2015857 | |||||||||
| Expr2034090 | |||||||||
| Drives_construct | WBCnstr00024082 | ||||||||
| Construct_product | WBCnstr00013989 | ||||||||
| WBCnstr00024082 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | X | Position | 24.142 | |||||
| Positive | Positive_clone | ZK54 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (24.1162) | |||||||||
| Method | Gene |
