WormBase Tree Display for Gene: WBGene00022495
expand all nodes | collapse all nodes | view schema
WBGene00022495 | SMap | S_parent | Sequence | Y119D3B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | fbxa-78 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y119D3B.19 | ||||||||
Molecular_name | Y119D3B.19 | ||||||||
Y119D3B.19.1 | |||||||||
CE15008 | |||||||||
Other_name | CELE_Y119D3B.19 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-78 | ||||||||
DB_info | Database | AceView | gene | 3C346 | |||||
WormQTL | gene | WBGene00022495 | |||||||
WormFlux | gene | WBGene00022495 | |||||||
NDB | locus_tag | CELE_Y119D3B.19 | |||||||
NCBI | gene | 191046 | |||||||
RefSeq | protein | NM_064957.7 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | G5EDF8 | |||||||
UniProt_GCRP | UniProtAcc | G5EDF8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-78 | ||||
3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00043944 | ||||
Acquires_merge | WBGene00043944 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (33) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00042835 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||
WBGene00122765 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
CSP28.g15362 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
chrIII_pilon.g6909 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00065925 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Paralog (199) | |||||||||
Structured_description | Concise_description | fbxa-78 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-78 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including hydrogen sulfide; methylmercury hydroxide; and sesamin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y119D3B.19 | |||||||
Corresponding_transcript | Y119D3B.19.1 | ||||||||
Associated_feature | WBsf991260 | ||||||||
WBsf991261 | |||||||||
WBsf226199 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | III | Position | -22.5751 | |||||
Positive | Positive_clone | Y119D3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00041771 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
Method | Gene |