WormBase Tree Display for Gene: WBGene00022458
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| WBGene00022458 | SMap | S_parent | Sequence | Y110A7A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | prp-31 | Person_evidence | WBPerson2214 | |||||
| Sequence_name | Y110A7A.8 | ||||||||
| Molecular_name | Y110A7A.8 | ||||||||
| Y110A7A.8.1 | |||||||||
| CE24126 | |||||||||
| Other_name | phi-5 | Person_evidence | WBPerson2582 | ||||||
| CELE_Y110A7A.8 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | prp-31 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-5 | ||||
| 3 | 22 Nov 2011 16:29:49 | WBPerson2970 | Name_change | CGC_name | prp-31 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00037509 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP1220 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | prp-31 is orthologous to the human gene U4/U6 small nuclear ribonucleoprotein Prp31 (PRPF31); prpf31 is a component of the spliceosome complex. | Curator_confirmed | WBPerson324 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U4 snRNP; precatalytic spliceosome; and spliceosomal tri-snRNP complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa 11. Is an ortholog of human PRPF31 (pre-mRNA processing factor 31). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110408 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15446) | ||||
| Disease_relevance | Mutations in the human U4/U6 small nuclear ribonucleoprotein Prp31 (PRPF31), have been implicated in Retinitis pigmentosa. | Homo sapiens | Accession_evidence | OMIM | 600138 | ||||
| 606419 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 May 2013 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y110A7A.8 | |||||||
| Corresponding_transcript | Y110A7A.8.1 | ||||||||
| Other_sequence (47) | |||||||||
| Associated_feature | WBsf643270 | ||||||||
| WBsf656286 | |||||||||
| WBsf656287 | |||||||||
| WBsf656288 | |||||||||
| WBsf983604 | |||||||||
| WBsf1009770 | |||||||||
| WBsf217625 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr1023460 | ||||||||
| Expr1039922 | |||||||||
| Expr1158869 | |||||||||
| Expr2015111 | |||||||||
| Expr2033349 | |||||||||
| Drives_construct | WBCnstr00021154 | ||||||||
| WBCnstr00024226 | |||||||||
| Construct_product | WBCnstr00024226 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (165) | |||||||||
| Map_info | Map | I | Position | -0.392123 | |||||
| Positive | Positive_clone | Y110A7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
