WormBase Tree Display for Gene: WBGene00022408

WBGene00022408 SMap: S_parent: Sequence: Y97E10B
  Identity: Version: 2
    Name: CGC_name: srsx-3 Person_evidence: WBPerson522
      Sequence_name: Y97E10B.9
      Molecular_name: Y97E10B.9
        Y97E10B.9.1
        CE26329
      Other_name: CELE_Y97E10B.9 Accession_evidence: NDB BX284605
      Public_name: srsx-3
    DB_info: Database: AceView gene 5I414
        WormQTL gene WBGene00022408
        WormFlux gene WBGene00022408
        NDB locus_tag CELE_Y97E10B.9
        Panther gene CAEEL|WormBase=WBGene00022408|UniProtKB=Q965R3
          family PTHR23360
        NCBI gene 190823
        RefSeq protein NM_072640.1
        TREEFAM TREEFAM_ID TF316033
        TrEMBL UniProtAcc Q965R3
        UniProt_GCRP UniProtAcc Q965R3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Mar 2005 15:19:58 WBPerson2970 Name_change: CGC_name: srsx-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srsx
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation: 00090569
      00090570
      00090571
      00090572
      00090573
      00126535
      00126536
      00126537
    Ortholog (26)
    Paralog (44)
    Structured_description: Automated_description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in non-motile cilium. Expressed in AWBL; AWBR; AWC-OFF; AWCL; and AWCR. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y97E10B.9
    Corresponding_transcript: Y97E10B.9.1
    Other_sequence: Tcir_isotig07821
    Associated_feature: WBsf047507
  Experimental_info: RNAi_result: WBRNAi00058693 Inferred_automatically: RNAi_primary
      WBRNAi00022503 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11095
      Expr12697
      Expr13174
      Expr15422
      Expr1022621
      Expr1162112
      Expr2016643
      Expr2034831
      Marker91
    Drives_construct: WBCnstr00005558
      WBCnstr00007709
      WBCnstr00018164
      WBCnstr00018719
      WBCnstr00021137
      WBCnstr00024246
    Construct_product: WBCnstr00018164
      WBCnstr00024246
    Microarray_results (18)
    Expression_cluster: WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042194:Tryptophan_upregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00061527:srj-21-srh-32
      WBPaper00061651:AWB_enriched
      WBPaper00061651:AWC_OFF_enriched
      WBPaper00062103:neuron_enriched
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00065841:35_2
      WBPaper00065841:101_0
      WBPaper00065841:111_0
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00024671:AFD_vs_AWB_downregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
  Map_info: Map: V Position: 0.965522 Error: 0.002014
    Positive: Positive_clone: Y97E10B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024671
    WBPaper00028910
    WBPaper00030504
    WBPaper00031175
    WBPaper00032896
    WBPaper00044991
    WBPaper00056672
    WBPaper00059878
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene