WormBase Tree Display for Gene: WBGene00022346

WBGene00022346 SMap: S_parent: Sequence: Y82E9BR
  Identity: Version: 2
    Name: CGC_name: pals-17 Person_evidence: WBPerson260
      Sequence_name: Y82E9BR.13
      Molecular_name: Y82E9BR.13
        WP:CE38010
        CE38010
        Y82E9BR.13.1
      Other_name: CELE_Y82E9BR.13 Accession_evidence: NDB BX284603
      Public_name: pals-17
    DB_info: Database: AceView gene 3C480
        WormQTL gene WBGene00022346
        WormFlux gene WBGene00022346
        NDB locus_tag CELE_Y82E9BR.13
        NCBI gene 175297
        RefSeq mRNA NM_065001.4
          protein NP_497402.2
            NM_065001.5
        TREEFAM TREEFAM_ID TF351164
        UniProt UniProtAcc Q9BKS4
        TrEMBL UniProtAcc Q9BKS4
        UniProt_GCRP UniProtAcc Q9BKS4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Oct 2016 09:42:35 WBPerson2970 Name_change: CGC_name: pals-17
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pals
    Allele (96)
    RNASeq_FPKM (74)
    Ortholog: chrIII_pilon.g6954 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00044761 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in ABplppppap; ABprppppap; head mesodermal cell; intestine; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and let-60 based on microarray and RNA-seq studies. Is affected by twelve chemicals including methylmercuric chloride; stavudine; and Rifampin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y82E9BR.13
    Corresponding_CDS_history: Y82E9BR.13:wp137
    Corresponding_transcript: Y82E9BR.13.1
    Associated_feature: WBsf717054
      WBsf991278
      WBsf1014220
      WBsf226204
      WBsf226205
  Experimental_info: RNAi_result: WBRNAi00080706 Inferred_automatically: RNAi_primary
      WBRNAi00058584 Inferred_automatically: RNAi_primary
      WBRNAi00009291 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017085
      Expr1161994
      Expr2014691
      Expr2032925
    Drives_construct: WBCnstr00024264
    Construct_product: WBCnstr00024264
    Regulate_expr_cluster: WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
    Microarray_results (13)
    Expression_cluster (119)
    Interaction: WBInteraction000030465
      WBInteraction000030740
      WBInteraction000217960
      WBInteraction000217981
      WBInteraction000384125
      WBInteraction000472380
      WBInteraction000514054
      WBInteraction000514055
      WBInteraction000516720
      WBInteraction000516789
  Map_info: Map: III Position: -21.8969
    Positive: Positive_clone: Y82E9BR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00032236
    WBPaper00061319
    WBPaper00065984
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene