WormBase Tree Display for Gene: WBGene00022214
expand all nodes | collapse all nodes | view schema
| WBGene00022214 | SMap | S_parent | Sequence | Y73B3A | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | cal-6 | Person_evidence | WBPerson260 | ||||||
| Sequence_name | Y73B3A.12 | |||||||||
| Molecular_name | Y73B3A.12 | |||||||||
| Other_name | CELE_Y73B3A.12 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | cal-6 | |||||||||
| DB_info | Database | AceView | gene | XA777 | ||||||
| WormQTL | gene | WBGene00022214 | ||||||||
| WormFlux | gene | WBGene00022214 | ||||||||
| NDB | locus_tag | CELE_Y73B3A.12 | ||||||||
| NCBI | gene | 190630 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 09 Mar 2012 14:04:45 | WBPerson2970 | Name_change | CGC_name | cal-6 | |||||
| 3 | 19 Apr 2016 10:54:36 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | cal | |||||||||
| Allele (15) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00115132 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00148309 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00147688 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00123425 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00061101 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog | WBGene00009585 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00017394 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell and neurons based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; eat-2; and alg-1 based on microarray and RNA-seq studies. Is affected by four chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y73B3A.12:wp253 | ||||||||
| Corresponding_pseudogene | Y73B3A.12 | |||||||||
| Other_sequence | GR12089 | |||||||||
| GRC00816_1 | ||||||||||
| PT00806 | ||||||||||
| Associated_feature | WBsf235246 | |||||||||
| WBsf235247 | ||||||||||
| WBsf235248 | ||||||||||
| Experimental_info | Expr_pattern | Expr1026634 | ||||||||
| Expr1039798 | ||||||||||
| Expr1161694 | ||||||||||
| Microarray_results (11) | ||||||||||
| Expression_cluster (52) | ||||||||||
| Map_info | Map | X | Position | -20.8459 | ||||||
| Positive | Positive_clone | Y73B3A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00050050 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
