WormBase Tree Display for Gene: WBGene00022149
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| WBGene00022149 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lin-65 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y71G12B.9 | ||||||||
| Molecular_name | Y71G12B.9a | ||||||||
| Y71G12B.9a.1 | |||||||||
| CE39067 | |||||||||
| Y71G12B.9b | |||||||||
| CE46695 | |||||||||
| Y71G12B.9c | |||||||||
| CE49525 | |||||||||
| Y71G12B.9b.1 | |||||||||
| Y71G12B.9c.1 | |||||||||
| Other_name | CELE_Y71G12B.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | lin-65 | ||||||||
| DB_info | Database | AceView | gene | 1C239 | |||||
| WormQTL | gene | WBGene00022149 | |||||||
| WormFlux | gene | WBGene00022149 | |||||||
| NDB | locus_tag | CELE_Y71G12B.9 | |||||||
| NCBI | gene | 171739 | |||||||
| RefSeq | protein | NM_001306509.3 | |||||||
| NM_170803.6 | |||||||||
| NM_170802.6 | |||||||||
| TrEMBL | UniProtAcc | W6RTP0 | |||||||
| Q95XN0 | |||||||||
| Q8IU04 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XN0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Feb 2007 08:55:27 | WBPerson2970 | Name_change | CGC_name | lin-65 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| Allele (342) | |||||||||
| Strain | WBStrain00027427 | ||||||||
| WBStrain00050693 | |||||||||
| WBStrain00050690 | |||||||||
| WBStrain00050694 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084240 | ||||||||
| 00084241 | |||||||||
| 00089104 | |||||||||
| 00089105 | |||||||||
| 00089106 | |||||||||
| 00089107 | |||||||||
| 00105881 | |||||||||
| 00105888 | |||||||||
| 00105889 | |||||||||
| 00105928 | |||||||||
| Contained_in_operon | CEOP1022 | ||||||||
| Ortholog (16) | |||||||||
| Structured_description | Concise_description | lin-65 is a encodes, by alternative splicing, two isoforms of a large (~600-residue), acid-rich, but unfamiliar protein that acts with the B class of synMuv genes (such as lin-35/Rb) to repress vulval induction, and that is required for fertility; LIN-65 isoforms share a ~400-residue N-terminal domain of low-complexity sequence which is probably nonglobular; in the longer LIN-65 isoform, there follows a ~100-residue proline-rich domain, but both isoforms lack regions of obvious similarity to non-nematode proteins; lin-65 genetically interacts with ark-1, lin-15, and gap-1. | Paper_evidence | WBPaper00006395 | |||||
| WBPaper00026636 | |||||||||
| WBPaper00027336 | |||||||||
| WBPaper00028381 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 15 Apr 2008 00:00:00 | ||||||||
| Automated_description | Involved in chromatin remodeling and mitochondrial unfolded protein response. Located in cytosol and nucleus. Expressed in head neurons and intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71G12B.9a | |||||||
| Y71G12B.9b | |||||||||
| Y71G12B.9c | |||||||||
| Corresponding_CDS_history | Y71G12B.9a:wp147 | ||||||||
| Y71G12B.9b:wp160 | |||||||||
| Y71G12B.9b:wp228 | |||||||||
| Corresponding_transcript | Y71G12B.9a.1 | ||||||||
| Y71G12B.9b.1 | |||||||||
| Y71G12B.9c.1 | |||||||||
| Other_sequence | CBC11959_1 | ||||||||
| AE02463 | |||||||||
| JI225395.1 | |||||||||
| DN190377.1 | |||||||||
| DN190405.1 | |||||||||
| JI467351.1 | |||||||||
| HC08397 | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr13228 | ||||||||
| Expr13871 | |||||||||
| Expr13872 | |||||||||
| Expr1023792 | |||||||||
| Expr1039755 | |||||||||
| Expr1161644 | |||||||||
| Expr2013198 | |||||||||
| Expr2031430 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | I | Position | -12.9123 | Error | 0.050688 | |||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
