WormBase Tree Display for Gene: WBGene00022122
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| WBGene00022122 | SMap | S_parent | Sequence | Y71F9AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trap-1 | |||||||
| Sequence_name | Y71F9AM.6 | ||||||||
| Molecular_name | Y71F9AM.6 | ||||||||
| Y71F9AM.6.1 | |||||||||
| CE26244 | |||||||||
| Other_name | CELE_Y71F9AM.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | trap-1 | ||||||||
| DB_info | Database | AceView | gene | 1D497 | |||||
| WormQTL | gene | WBGene00022122 | |||||||
| WormFlux | gene | WBGene00022122 | |||||||
| NDB | locus_tag | CELE_Y71F9AM.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022122|UniProtKB=Q95XT5 | |||||||
| family | PTHR12924 | ||||||||
| NCBI | gene | 171865 | |||||||
| RefSeq | protein | NM_058675.6 | |||||||
| TREEFAM | TREEFAM_ID | TF321074 | |||||||
| TrEMBL | UniProtAcc | Q95XT5 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XT5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Oct 2007 11:57:48 | WBPerson2970 | Name_change | CGC_name | trap-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trap | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00052143 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089323 | ||||||||
| 00089324 | |||||||||
| 00089325 | |||||||||
| 00089326 | |||||||||
| 00089327 | |||||||||
| 00126306 | |||||||||
| Contained_in_operon | CEOP1076 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to be located in endoplasmic reticulum. Is an ortholog of human SSR1 (signal sequence receptor subunit 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71F9AM.6 | |||||||
| Corresponding_transcript | Y71F9AM.6.1 | ||||||||
| Other_sequence (52) | |||||||||
| Associated_feature | WBsf643122 | ||||||||
| WBsf656098 | |||||||||
| WBsf980978 | |||||||||
| WBsf983020 | |||||||||
| WBsf217351 | |||||||||
| WBsf217352 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058169 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr14927 | ||||||||
| Expr14928 | |||||||||
| Expr1025554 | |||||||||
| Expr1039735 | |||||||||
| Expr1161586 | |||||||||
| Expr2017481 | |||||||||
| Expr2035620 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | I | Position | -5.29003 | Error | 0.002706 | |||
| Positive | Positive_clone | Y71F9AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047692 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058976 | |||||||||
| WBPaper00061795 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00062794 | |||||||||
| WBPaper00065356 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
