WormBase Tree Display for Gene: WBGene00022072
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| WBGene00022072 | SMap | S_parent | Sequence | Y67D8C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpg-9 | |||||||
| Sequence_name | Y67D8C.8 | ||||||||
| Molecular_name | Y67D8C.8 | ||||||||
| Y67D8C.8.1 | |||||||||
| CE27506 | |||||||||
| Other_name | CELE_Y67D8C.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cpg-9 | ||||||||
| DB_info | Database | AceView | gene | 4D834 | |||||
| WormQTL | gene | WBGene00022072 | |||||||
| WormFlux | gene | WBGene00022072 | |||||||
| NDB | locus_tag | CELE_Y67D8C.8 | |||||||
| NCBI | gene | 177087 | |||||||
| RefSeq | protein | NM_067888.10 | |||||||
| SwissProt | UniProtAcc | Q95XP7 | |||||||
| TREEFAM | TREEFAM_ID | TF342932 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XP7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Jun 2006 15:10:10 | WBPerson2970 | Name_change | CGC_name | cpg-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpg | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00033181 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (15) | |||||||||
| Paralog | WBGene00012309 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | cpg-9 encodes a small (69-residue), putatively secreted protein with 4potential chondroitin attachment sites, 2 of them verified by massspectrometry; CPG-9 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00027679 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 May 2007 00:00:00 | ||||||||
| Automated_description | Enriched in ABplpappaa; ALA; M cell; excretory cell; and muscle cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by twenty-three chemicals including rotenone; Tunicamycin; and D-glucopyranose based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y67D8C.8 | |||||||
| Corresponding_transcript | Y67D8C.8.1 | ||||||||
| Other_sequence | MJ02454 | ||||||||
| SR04817 | |||||||||
| CBC12096_1 | |||||||||
| CJC05401_1 | |||||||||
| Associated_feature | WBsf651693 | ||||||||
| WBsf229863 | |||||||||
| WBsf229864 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00007441 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021266 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058005 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025735 | ||||||||
| Expr1161426 | |||||||||
| Expr2010488 | |||||||||
| Expr2028728 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (240) | |||||||||
| Map_info | Map | IV | Position | -6.04676 | Error | 0.100472 | |||
| Positive | Positive_clone | Y67D8C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029024 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
