WormBase Tree Display for Gene: WBGene00022044
expand all nodes | collapse all nodes | view schema
| WBGene00022044 | SMap | S_parent | Sequence | Y66H1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dpm-1 | |||||||
| Sequence_name | Y66H1A.2 | ||||||||
| Molecular_name | Y66H1A.2a | ||||||||
| Y66H1A.2a.1 | |||||||||
| CE37731 | |||||||||
| Y66H1A.2b | |||||||||
| CE48726 | |||||||||
| Y66H1A.2b.1 | |||||||||
| Other_name | CELE_Y66H1A.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dpm-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Feb 2008 10:23:00 | WBPerson2970 | Name_change | CGC_name | dpm-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpm | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00051416 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP4028 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00019276 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | dpm-1 encodes a putative catalytic subunit of dolichol phosphate mannosyltransferase, orthologous to budding yeast and human DPM1 (OMIM:603503, mutated in congenital disorder of glycosylation type Ie); in mass RNAi assays, DPM-1 is required for embryonic viability and proper cortical motion in the early embryo. | Paper_evidence | WBPaper00025054 | |||||
| WBPaper00031552 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable dolichyl-phosphate beta-D-mannosyltransferase activity. Predicted to be involved in dolichol-linked oligosaccharide biosynthetic process and protein O-linked mannosylation. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ie. Is an ortholog of human DPM1 (dolichyl-phosphate mannosyltransferase subunit 1, catalytic). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080557 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3005) | ||||
| Molecular_info | Corresponding_CDS | Y66H1A.2a | |||||||
| Y66H1A.2b | |||||||||
| Corresponding_CDS_history | Y66H1A.2:wp134 | ||||||||
| Corresponding_transcript | Y66H1A.2a.1 | ||||||||
| Y66H1A.2b.1 | |||||||||
| Other_sequence (67) | |||||||||
| Associated_feature | WBsf659877 | ||||||||
| WBsf659878 | |||||||||
| WBsf659879 | |||||||||
| WBsf995144 | |||||||||
| WBsf1016548 | |||||||||
| WBsf227847 | |||||||||
| WBsf227848 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00115334 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115324 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111252 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111268 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115286 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111269 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057957 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115265 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037716 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028542 | ||||||||
| Expr1039693 | |||||||||
| Expr1161384 | |||||||||
| Expr2011051 | |||||||||
| Expr2029288 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction (99) | |||||||||
| Map_info | Map | IV | Position | -25.9346 | Error | 0.019076 | |||
| Positive | Positive_clone | Y66H1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032961 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045573 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
