WormBase Tree Display for Gene: WBGene00022025
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| WBGene00022025 | SMap | S_parent | Sequence | Y65B4A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cus-2 | |||||||
| Sequence_name | Y65B4A.1 | ||||||||
| Molecular_name | Y65B4A.1 | ||||||||
| Y65B4A.1.1 | |||||||||
| CE27299 | |||||||||
| Other_name | Y65B4A.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y65B4A.j | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y65B4A_179.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y65B4A.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | cus-2 | ||||||||
| DB_info | Database | AceView | gene | 1B131 | |||||
| WormQTL | gene | WBGene00022025 | |||||||
| WormFlux | gene | WBGene00022025 | |||||||
| NDB | locus_tag | CELE_Y65B4A.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022025|UniProtKB=Q9BL57 | |||||||
| family | PTHR15608 | ||||||||
| NCBI | gene | 171656 | |||||||
| RefSeq | protein | NM_058364.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313623 | |||||||
| TrEMBL | UniProtAcc | Q9BL57 | |||||||
| UniProt_GCRP | UniProtAcc | Q9BL57 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | cus-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cus | ||||||||
| Allele (153) | |||||||||
| Strain | WBStrain00037902 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091911 | ||||||||
| 00091912 | |||||||||
| 00091913 | |||||||||
| 00091914 | |||||||||
| 00091915 | |||||||||
| 00126201 | |||||||||
| 00126202 | |||||||||
| Contained_in_operon | CEOP1977 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be part of U2 snRNP and U2-type spliceosomal complex. Is an ortholog of human HTATSF1 (HIV-1 Tat specific factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y65B4A.1 | |||||||
| Corresponding_transcript | Y65B4A.1.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature | WBsf643026 | ||||||||
| WBsf217152 | |||||||||
| WBsf217153 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1023210 | ||||||||
| Expr1039679 | |||||||||
| Expr1161330 | |||||||||
| Expr2008158 | |||||||||
| Expr2026398 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | I | Position | -18.6275 | |||||
| Positive | Positive_clone | Y65B4A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036244 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
