WormBase Tree Display for Gene: WBGene00021973
expand all nodes | collapse all nodes | view schema
| WBGene00021973 | SMap | S_parent | Sequence | Y57G7A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | emc-2 | Person_evidence | WBPerson61 | |||||
| Sequence_name | Y57G7A.10 | ||||||||
| Molecular_name | Y57G7A.10 | ||||||||
| Y57G7A.10.1 | |||||||||
| CE19639 | |||||||||
| Other_name | tpr-2 | Paper_evidence | WBPaper00045991 | ||||||
| CELE_Y57G7A.10 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | emc-2 | ||||||||
| DB_info | Database | AceView | gene | 2B594 | |||||
| WormQTL | gene | WBGene00021973 | |||||||
| WormFlux | gene | WBGene00021973 | |||||||
| NDB | locus_tag | CELE_Y57G7A.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021973|UniProtKB=O76630 | |||||||
| family | PTHR12760 | ||||||||
| NCBI | gene | 173509 | |||||||
| RefSeq | protein | NM_001267099.3 | |||||||
| TREEFAM | TREEFAM_ID | TF312997 | |||||||
| TrEMBL | UniProtAcc | O76630 | |||||||
| UniProt_GCRP | UniProtAcc | O76630 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Dec 2012 14:02:14 | WBPerson2970 | Name_change | CGC_name | emc-2 | ||||
| 3 | 12 Nov 2014 11:24:01 | WBPerson2970 | Name_change | Other_name | tpr-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | emc | ||||||||
| Allele (108) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038573 | ||||||||
| 00038574 | |||||||||
| 00038575 | |||||||||
| 00038576 | |||||||||
| 00038577 | |||||||||
| 00038578 | |||||||||
| 00038579 | |||||||||
| 00038580 | |||||||||
| Contained_in_operon | CEOP2044 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Located in sarcoplasmic reticulum. Is an ortholog of human EMC2 (ER membrane protein complex subunit 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57G7A.10 | |||||||
| Corresponding_CDS_history | Y57G7A.10b:wp161 | ||||||||
| Corresponding_transcript | Y57G7A.10.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf986641 | ||||||||
| WBsf986642 | |||||||||
| WBsf986643 | |||||||||
| WBsf986644 | |||||||||
| WBsf1011527 | |||||||||
| WBsf1011528 | |||||||||
| WBsf1011529 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr7082 | ||||||||
| Expr9422 | |||||||||
| Expr1014176 | |||||||||
| Expr1039664 | |||||||||
| Expr1161141 | |||||||||
| Expr2011306 | |||||||||
| Expr2029542 | |||||||||
| Drives_construct | WBCnstr00004052 | ||||||||
| Construct_product | WBCnstr00013987 | ||||||||
| WBCnstr00016304 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | II | Position | -15.5134 | |||||
| Positive | Positive_clone | Y57G7A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
