WormBase Tree Display for Gene: WBGene00021942
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| WBGene00021942 | SMap | S_parent | Sequence | Y55F3BR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | madf-1 | Person_evidence | WBPerson1997 | |||||
| Sequence_name | Y55F3BR.5 | ||||||||
| Molecular_name | Y55F3BR.5a | ||||||||
| Y55F3BR.5a.1 | |||||||||
| CE22540 | |||||||||
| Y55F3BR.5b | |||||||||
| CE48756 | |||||||||
| Y55F3BR.5c | |||||||||
| CE48865 | |||||||||
| Y55F3BR.5b.1 | |||||||||
| Y55F3BR.5c.1 | |||||||||
| Other_name | Y55F3BR.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y55F3BR.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | madf-1 | ||||||||
| DB_info | Database | AceView | gene | 4B582 | |||||
| WormQTL | gene | WBGene00021942 | |||||||
| SignaLink | protein | WBGene00021942 | |||||||
| WormFlux | gene | WBGene00021942 | |||||||
| NDB | locus_tag | CELE_Y55F3BR.5 | |||||||
| NCBI | gene | 190316 | |||||||
| RefSeq | protein | NM_001380021.1 | |||||||
| NM_001380020.2 | |||||||||
| NM_001307533.3 | |||||||||
| TrEMBL | UniProtAcc | Q9N352 | |||||||
| U4PBX0 | |||||||||
| U4PMC7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N352 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | madf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | madf | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00055564 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including accessory cell; germ line; germline precursor cell; head mesodermal cell; and neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on microarray; RNA-seq; and tiling array studies. Is affected by six chemicals including rotenone; mianserin; and paraquat based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: MADF domain and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55F3BR.5a | |||||||
| Y55F3BR.5b | |||||||||
| Y55F3BR.5c | |||||||||
| Corresponding_transcript | Y55F3BR.5a.1 | ||||||||
| Y55F3BR.5b.1 | |||||||||
| Y55F3BR.5c.1 | |||||||||
| Other_sequence | RS08439 | ||||||||
| Associated_feature | WBsf667659 | ||||||||
| WBsf667733 | |||||||||
| WBsf995277 | |||||||||
| Transcription_factor | WBTranscriptionFactor001106 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00021042 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037529 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057547 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017603 | ||||||||
| Expr1039652 | |||||||||
| Expr1160981 | |||||||||
| Expr2013338 | |||||||||
| Expr2031570 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | IV | Position | -23.3078 | Error | 0.025833 | |||
| Positive | Positive_clone | Y55F3BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
