WormBase Tree Display for Gene: WBGene00021843

WBGene00021843 SMap: S_parent: Sequence: Y54E10BR
  Identity: Version: 2
    Name (5)
    DB_info: Database: AceView gene 1D589
        WormQTL gene WBGene00021843
        WormFlux gene WBGene00021843
        NDB locus_tag CELE_Y54E10BR.4
        Panther gene CAEEL|WormBase=WBGene00021843|UniProtKB=Q9N3D3
          family PTHR12814
        NCBI gene 171874
        RefSeq protein NM_001424977.1
            NM_058689.6
        TrEMBL UniProtAcc Q9N3D3
        UniProt_GCRP UniProtAcc Q9N3D3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Jan 2024 23:28:21 WBPerson51134 Name_change: CGC_name: nobh-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nobh
    Allele (144)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP1080
    Ortholog: WBGene00057102 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00026917 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163350 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191278 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227064 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8991 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g760 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g2479 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2950 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g1732 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8313 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11885 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14044 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5791 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g10797 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y54E10BR.4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold627.g6911 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00740.g15007 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17257 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_000911 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06214 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8208 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10149300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g445 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00206843 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00209599 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00238404 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263309 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294873 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005582 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0030177 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-3112 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:29540 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914869 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:735222 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA endonuclease activity. Predicted to be involved in maturation of SSU-rRNA. Located in cytoplasm. Expressed in neurons. Is an ortholog of human NOB1 (NIN1 (RPN12) binding protein 1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54E10BR.4a
      Y54E10BR.4b
    Corresponding_CDS_history: Y54E10BR.4a:wp50
      Y54E10BR.4b:wp50
    Corresponding_transcript: Y54E10BR.4a.1
      Y54E10BR.4b.1
    Other_sequence (28)
    Associated_feature: WBsf643127
      WBsf980981
      WBsf983045
      WBsf983046
      WBsf1009443
      WBsf217360
  Experimental_info: RNAi_result (24)
    Expr_pattern: Expr4584
      Expr9578
      Expr1016632
      Expr1039587
      Expr1160799
      Expr2007894
      Expr2026136
    Drives_construct: WBCnstr00012093
    Construct_product: WBCnstr00014143
    Microarray_results (24)
    Expression_cluster (129)
    Interaction (168)
  Map_info: Map: I Position: -4.94196
    Positive: Positive_clone: Y54E10BR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027740
    WBPaper00029254
    WBPaper00034662
    WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene