WormBase Tree Display for Gene: WBGene00021832
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| WBGene00021832 | SMap | S_parent | Sequence | Y54E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | syp-5 | Person_evidence | WBPerson26497 | |||||
| Sequence_name | Y54E10A.12 | ||||||||
| Molecular_name | Y54E10A.12a | ||||||||
| Y54E10A.12a.1 | |||||||||
| CE24441 | |||||||||
| Y54E10A.12b | |||||||||
| CE54227 | |||||||||
| Y54E10A.12b.1 | |||||||||
| Other_name | CELE_Y54E10A.12 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | syp-5 | ||||||||
| DB_info | Database | AceView | gene | 1D762 | |||||
| WormQTL | gene | WBGene00021832 | |||||||
| WormFlux | gene | WBGene00021832 | |||||||
| NDB | locus_tag | CELE_Y54E10A.12 | |||||||
| NCBI | gene | 171894 | |||||||
| RefSeq | protein | NM_058719.8 | |||||||
| NM_001393184.1 | |||||||||
| TrEMBL | UniProtAcc | A0A6V7QYG0 | |||||||
| Q9N3E8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N3E8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | syp-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syp | ||||||||
| Allele (114) | |||||||||
| Possibly_affected_by | WBVar02153163 | ||||||||
| Strain | WBStrain00049461 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1916 | ||||||||
| Ortholog (19) | |||||||||
| Paralog | WBGene00019002 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on proteomic; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; hsf-1; and let-7 based on microarray; proteomic; and RNA-seq studies. Is affected by twelve chemicals including manganese chloride; D-glucose; and bisphenol S based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E10A.12a | |||||||
| Y54E10A.12b | |||||||||
| Corresponding_transcript | Y54E10A.12a.1 | ||||||||
| Y54E10A.12b.1 | |||||||||
| Other_sequence | MJ02908 | ||||||||
| ES672502.1 | |||||||||
| Associated_feature | WBsf664020 | ||||||||
| WBsf983083 | |||||||||
| WBsf1009467 | |||||||||
| WBsf1009468 | |||||||||
| WBsf219108 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061653 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037452 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004724 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057340 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004729 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15013 | ||||||||
| Expr15014 | |||||||||
| Expr15016 | |||||||||
| Expr15017 | |||||||||
| Expr1027087 | |||||||||
| Expr1039579 | |||||||||
| Expr1160777 | |||||||||
| Expr2007887 | |||||||||
| Expr2026128 | |||||||||
| Antibody | WBAntibody00002890 | ||||||||
| WBAntibody00002891 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Positive | Positive_clone | Y54E10A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -4.47322 | |||||||
| Reference | WBPaper00057635 | ||||||||
| WBPaper00059491 | |||||||||
| WBPaper00059492 | |||||||||
| WBPaper00061461 | |||||||||
| WBPaper00066333 | |||||||||
| Method | Gene |
